View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_159 (Length: 249)
Name: NF9366_low_159
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_159 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 16584506 - 16584745
Alignment:
| Q |
1 |
gaatataaatttttctttgattaaagatttgaataaactctgatagtcatcaaaattcaaccagagaatgtatatgtcgtttgtagttgtagagaaattt |
100 |
Q |
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| T |
16584506 |
gaatagaaatttttctttgattaaagatttgaataaactctgatagtcatcaaaatttaaccagagaatgtatatgtcgtttgtagttgaagagaaattt |
16584605 |
T |
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| Q |
101 |
tgagtcgttactttttagaagtactagaatgagannnnnnnnncttcgagaaaagaggttgtcacttgattagaggtttctgagtagcacgataatttta |
200 |
Q |
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| T |
16584606 |
tgagtcgttactttttagaagtactagaatgagatttttttttcttcgagaaaagaggttgtcacttgattagaagtttttgagtagcacgataatttta |
16584705 |
T |
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| Q |
201 |
aactgttctataaaggttagaattgtcaaagaagtataat |
240 |
Q |
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| T |
16584706 |
aactgttctataaaggttagaattgtcaaagaagtataat |
16584745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 12112083 - 12112025
Alignment:
| Q |
2 |
aatataaatttttctttgattaaagatttgaataaactctgatagtcatcaaaattcaa |
60 |
Q |
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|||||||||| ||| |||||| |||||||||| ||||| |||||||||||||||||| |
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| T |
12112083 |
aatataaattcatctgtgattacagatttgaatggactcttatagtcatcaaaattcaa |
12112025 |
T |
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