View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_16 (Length: 512)
Name: NF9366_low_16
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Original strand, 32031795 - 32032277
Alignment:
| Q |
20 |
cctgagagatgtgggaaatttgggctttgtgaggataatcaatgtgttggttgtccattggagaatggaatatttggttggagtaataaatgtaatgcta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32031795 |
cctgagagatgtgggaaatttgggctttgtgaggataatcaatgtgttggttgtccattggagaatggaatatttggttggagtaataaatgtaatgcta |
32031894 |
T |
|
| Q |
120 |
agcctttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32031895 |
agcctttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaag |
32031994 |
T |
|
| Q |
220 |
tgaagatgcatgtggaaacaaatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32031995 |
tgaagatgcatgtggaaacaaatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaa |
32032094 |
T |
|
| Q |
320 |
acccttactaaagtagaaaatactacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtcttggtat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32032095 |
acccttactaaagtagaaaatactacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtcttggtat |
32032194 |
T |
|
| Q |
420 |
tgtattttaattgtatcaatttaatatagttatttcctactagtggttttagattgcaataaagttgtcgttatctctctgct |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32032195 |
tgtattttaattgtatcaatttaatatagttatttcctactagtggttttagattgcaataaagttgtcgttatctctctgct |
32032277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 23 - 487
Target Start/End: Original strand, 32064938 - 32065423
Alignment:
| Q |
23 |
gagagatgtgggaaatttgggctttgtgaggataatcaatgtgttggttgtccattggagaatggaatatttggttggagtaataaatgtaatgctaagc |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
32064938 |
gagagatgtggggaatttgggctttgtgaggataatcaatgttttggttgtccattggagaatggaatatttggttggagtaataagtgtagccctaagc |
32065037 |
T |
|
| Q |
123 |
ctttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaagtga |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
32065038 |
ctttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcattacatgaacaaatacactagtggtgatatagtaagtga |
32065137 |
T |
|
| Q |
223 |
agatgcatgtggaaacaaatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaaacc |
322 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
32065138 |
agatgcatgtggaaacaaatgtaccaatgattgtaagtgtgttgggtatttctaccataaggatgaatcaaggtgttggatagcttatgatcttcaaact |
32065237 |
T |
|
| Q |
323 |
cttactaaagtagaaaatactacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtc---------- |
412 |
Q |
| |
|
||||||| ||| ||||||| ||||| ||||||| ||||||||| ||||||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
32065238 |
cttactagagttcaaaataccacacatgtgggttatattaaggtgcctaataagtaataagataagcttagatttttccatgggaaggtcttggtatttt |
32065337 |
T |
|
| Q |
413 |
-----------ttggtattgtattttaattgtatcaatttaatatagttatttcctactagtggttttagattgcaataaagttgt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
32065338 |
tttttttttttttggtattgtattttaattgtatcaatttaattttgttatttcctactagttgttttagaatgcaataaagttgt |
32065423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 32072265 - 32072458
Alignment:
| Q |
24 |
agagatgtgggaaatttgggctttgtgaggataatcaatgtgttggttgtccattggagaatggaatatttggttggagtaataaatgtaatgctaagcc |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||| ||||| |||| ||||||||| |
|
|
| T |
32072265 |
agagatgtggaaaatttgggctttgtgaggataatcaatgtgttggttgtcctttggagaatggaatcttaagttcgagcaataattgtagtgctaagcc |
32072364 |
T |
|
| Q |
124 |
tttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaagt |
220 |
Q |
| |
|
| | || |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||| |
|
|
| T |
32072365 |
t---gtagtagtatgcaaagcaagtgagtttcattactacaaaattgaaggagttgagcattatatgagcaaatacactgttggtgatagagtaagt |
32072458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University