View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_168 (Length: 242)
Name: NF9366_low_168
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_168 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 18416024 - 18415804
Alignment:
| Q |
12 |
tgtttaatagattgtcagtcccaaacgattatataagatgagtatacagaagggaagnnnnnnnnn------ttcctactagtcaaacaatattgtttgc |
105 |
Q |
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| T |
18416024 |
tgtttaattgattgtcagtcccaaacgattatataagatgagtatatagaatggaaaaaaaaaaaaaaaaaattcctactaatcaaacaatattgtctgc |
18415925 |
T |
|
| Q |
106 |
ggcgtttagccttgctccattaattacgtgggttgtatgtttgtttttcctcattgagggggtgtgtgacgctccacattcagctgacaacttttctttt |
205 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18415924 |
ggtgtttagccttgctccattaattacgtgggttgtatgtttgtttttcctcattgagggggtgtgtgacgctccacattcagctgacaacttttctttt |
18415825 |
T |
|
| Q |
206 |
tgtggcataatttgttgacaa |
226 |
Q |
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||||||||||||||||||||| |
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| T |
18415824 |
tgtggcataatttgttgacaa |
18415804 |
T |
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