View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_171 (Length: 241)
Name: NF9366_low_171
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_171 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13397785 - 13397562
Alignment:
| Q |
1 |
ttagttccccgctttcaactgccatgttaaggacgatattacgtttaagttttgtttaaaatgttgtcaaaaaccagccaaataaagagtattctagata |
100 |
Q |
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| T |
13397785 |
ttagttccccgctttcaactgccatgttaaggacgatattacgtttaagttttgtttaaaatgttgtcaaaaaccaccccaataaagagtattctagata |
13397686 |
T |
|
| Q |
101 |
taatgaatttcttttttgggaaacttaccaaaggaaaattcatcttctaacttataacaaatacaaaagcaaaacaaaacagattcaatagttgctggat |
200 |
Q |
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| T |
13397685 |
taatgaatttct-ttttgcgaaaattacctaaggaaaactcatcttctaacttataacgaatacaaaagcaaaacaaaacagattcaatagttgctggat |
13397587 |
T |
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| Q |
201 |
tgtcaacccgctaacaataactaat |
225 |
Q |
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| T |
13397586 |
tgtcaacccgctaacaataactaat |
13397562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 20140396 - 20140456
Alignment:
| Q |
56 |
ttaaaatgttgtcaaaaaccagccaaataaagagtattctagatataatgaatttcttttt |
116 |
Q |
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||||||||||||||||| | | || |||||||||||||||| ||||| ||||||||||||| |
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| T |
20140396 |
ttaaaatgttgtcaaaatctaacctaataaagagtattctaaatatattgaatttcttttt |
20140456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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