View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_177 (Length: 240)
Name: NF9366_low_177
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_177 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 29305664 - 29305463
Alignment:
| Q |
2 |
attgacatccacacacggtatggtatattagattatgattcgctattgtcacggcacgtttttacacaatcaacacaatgatggttgttggatgatggtc |
101 |
Q |
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| T |
29305664 |
attgacatccacacacggtat-----attagattatgattcactattgtctcggcaagtttttacgcagtcaacacaatggtggtttttggatgatagtc |
29305570 |
T |
|
| Q |
102 |
taaattttaacgtagattttgatgttttaaatatatnnnnnnnnctaaatttgaaatctagattgttcaattttagtcaacggttattgtcgatatattg |
201 |
Q |
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|||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29305569 |
taaattttaacgtaaattatgatgttttaaatataaaaaaaaaattaaatttgaaatctagattgttcaattttagtcaacggttattgtcgatatactg |
29305470 |
T |
|
| Q |
202 |
attgcat |
208 |
Q |
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||||||| |
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| T |
29305469 |
attgcat |
29305463 |
T |
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