View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_18 (Length: 507)
Name: NF9366_low_18
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 6 - 490
Target Start/End: Original strand, 40617531 - 40618019
Alignment:
| Q |
6 |
ttggtgttggtggtgaaggtgatggttgggagcagatgcgggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgca |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617531 |
ttggtggtggtggtgaaggtgatggttgggagcagatgcgggttccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgca |
40617630 |
T |
|
| Q |
106 |
gtcgttgagagttctacaaggtccattgcatgaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnnca |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40617631 |
gtcgttgagagttctacaaggtccgttgcatgaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctaaaaaaaca |
40617730 |
T |
|
| Q |
206 |
agatttgatatctgagccattgagattagaatagagagtgagtagattttgtgtgctcgagcttcaagtgttactttggcatatatagggcaattgcatg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617731 |
agatttgatatctgagccattgagattagaatagagagtgagtagtttttgtgtgcttgagcttcaagtgttactttggcatatatagggcaattgcatg |
40617830 |
T |
|
| Q |
306 |
tccatatatatagagtcccaaatgttgtattgtacccaccatggag---ttattatacctaact-agaatacaaattgagcatctaattttgaaaattgg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617831 |
tccatatatatagagtcccaaatgttgtattgtacccaccatggagttattattatacctaaatcagaatacaaattgagcatctaattttgaaaattgg |
40617930 |
T |
|
| Q |
402 |
aacaaattgcaagttttgactagtttttgcgagtcttttaatcatacttaattcattctaaactataatatatttttggcatgtcatac |
490 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40617931 |
aacaaatagcaagttttgactagtttttgcgagtcttttaattatacttaattcattctaaactataagatatttttggcatgtcatac |
40618019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 40641069 - 40640878
Alignment:
| Q |
46 |
ggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccattgcatgaggaaata |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
40641069 |
ggtcccaacgtcagggtcatcgttgcattttccattgatgcaaatgagttgaccagcgcagtcgttgagagttttacaaggtccgttgcatgaggaaata |
40640970 |
T |
|
| Q |
146 |
gcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaat |
237 |
Q |
| |
|
||| || ||||||||| |||||||||||| |||| ||||||||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
40640969 |
acatttgtaaggaatggaatgtttatgatgttgaaaaggaaaatggaagctaaaaaaacaagatttgaaacgtgagccattgagattagaat |
40640878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 40628109 - 40628340
Alignment:
| Q |
12 |
ttggtggtgaaggtgatggttgggagcagatgcgggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgtt |
111 |
Q |
| |
|
|||||||||| ||||| || | || ||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| | || || || |
|
|
| T |
40628109 |
ttggtggtgacggtgagggattggtgcagatgtgggtcccaatgtcggggtcatcgttgcatttgccgttgatgcaaatgagttgaccatcacaatcatt |
40628208 |
T |
|
| Q |
112 |
gagagttctacaaggtccattgcatgaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagattt |
211 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||||| |||||||||||| |||||| || || |||| ||||||| ||||| ||||||| |
|
|
| T |
40628209 |
gagagtgttgcatggtccattgcatgaggaaatagcatttgtgaggaatggaatgtttataatattgaaaaggaaaatgcaagctagaaaaataagattt |
40628308 |
T |
|
| Q |
212 |
gatatctgagccattgagattagaatagagag |
243 |
Q |
| |
|
||||| ||||||| |||||||||| |||||| |
|
|
| T |
40628309 |
gatatgcgagccatcgagattagaacagagag |
40628340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 40610925 - 40611131
Alignment:
| Q |
37 |
gcagatgcgggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccattgcat |
136 |
Q |
| |
|
||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | || ||| |||||| |
|
|
| T |
40610925 |
gcagatgtgggtcccaatatctgggtcatcgttacattttccgttgatgcaaatgagttgaccataacagtcgttgagatcgttgcatcctccgttgcat |
40611024 |
T |
|
| Q |
137 |
gaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaa |
236 |
Q |
| |
|
|| |||||||| | |||||||| ||| |||| | ||||| |||| ||||||||||||| ||||||||||||| ||| |||||||| || | |
|
|
| T |
40611025 |
gaagaaatagcgttggtgaggaaaggaaggtttgtaatgttgaaaaggaaaatggaagctagaaaaacaagatttgatatgagagtcattgagagtatag |
40611124 |
T |
|
| Q |
237 |
tagagag |
243 |
Q |
| |
|
||||||| |
|
|
| T |
40611125 |
tagagag |
40611131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University