View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_180 (Length: 240)
Name: NF9366_low_180
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_180 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 9629955 - 9629767
Alignment:
| Q |
37 |
tttgccgattggaattgcagcttcattgtctctatgttgtggattgtatatgatagtatctattgttgtggttggtttagtaccttactatgatatcaat |
136 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9629955 |
tttgccaataggaattgcagcttcattgtctctatgttgtggattgtatatgatagtatccattgttgtggttggtttagtaccttactatgatatcaat |
9629856 |
T |
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| Q |
137 |
cctaacactcctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctattatgattgt |
225 |
Q |
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| T |
9629855 |
cctaacactcctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctattatgattgt |
9629767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 37 - 217
Target Start/End: Complemental strand, 9615459 - 9615279
Alignment:
| Q |
37 |
tttgccgattggaattgcagcttcattgtctctatgttgtggattgtatatgatagtatctattgttgtggttggtttagtaccttactatgatatcaat |
136 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9615459 |
tttgccaattggaattgcagcttcattgtctctatgttgtggattgtatatgatagtatctattgttgttgttggtttagtaccttactatgatatcaat |
9615360 |
T |
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| Q |
137 |
cctaacactcctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctatt |
217 |
Q |
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| T |
9615359 |
cctaacacccccatatcttctgcttttgccgtcaatggaatgcaatgggcagcgtatgtttcataaatttgctactctatt |
9615279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 9650101 - 9649930
Alignment:
| Q |
47 |
ggaattgcagcttcattgtctctatgttgtggattgtatatgatagtatctattgttgtggttggtttagtaccttactatgatatcaatcctaacactc |
146 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9650101 |
ggaattgcagcttcattgtcactatgttgtggattgtatatgatagtatccattgttgtggttggtttagtaccttactatgatatcaatcctaacaccc |
9650002 |
T |
|
| Q |
147 |
ctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctatta |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||| || || |||||||||||||| |
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| T |
9650001 |
ctatatcttctgcttttgctgtcaatggaatgcaatgggctgcgtaagttttacaattttgcaactctatta |
9649930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 9656118 - 9655947
Alignment:
| Q |
47 |
ggaattgcagcttcattgtctctatgttgtggattgtatatgatagtatctattgttgtggttggtttagtaccttactatgatatcaatcctaacactc |
146 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9656118 |
ggaattgcagcttcattgtcactatgttgtggattgtatatgatagtatccattgttgtggttggtttagtaccttactatgatatcaatcctaacaccc |
9656019 |
T |
|
| Q |
147 |
ctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctatta |
218 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| ||||||||| || || |||||||||||||| |
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| T |
9656018 |
ctatatcttctgcttttgctgtcaatggaatgcaatgggctgcgtaagttttacaattttgcaactctatta |
9655947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 9640059 - 9639871
Alignment:
| Q |
37 |
tttgccgattggaattgcagcttcattgtctctatgttgtggattgtatatgatagtatctattgttgtggttggtttagtaccttactatgatatcaat |
136 |
Q |
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|||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9640059 |
tttgccaataggaattgcagcatcattgtcactatgttgtggattgtatatgatagtatccattgttgtggttggtttagtaccttactatgatatcaat |
9639960 |
T |
|
| Q |
137 |
cctaacactcctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctattatgattgt |
225 |
Q |
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|| ||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| ||||||| |
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| T |
9639959 |
cccaacacccctatatcctctgcatttgctgtcaatggaatgcaatgggcagcgtaagttttataaatttgttactctattgtgattgt |
9639871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9649980 - 9649940
Alignment:
| Q |
1 |
tcaatggaatgcaatgggctgcgtaagttttacaattttgc |
41 |
Q |
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| T |
9649980 |
tcaatggaatgcaatgggctgcgtaagttttacaattttgc |
9649940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9655997 - 9655957
Alignment:
| Q |
1 |
tcaatggaatgcaatgggctgcgtaagttttacaattttgc |
41 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
9655997 |
tcaatggaatgcaatgggctgcgtaagttttacaattttgc |
9655957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 33643724 - 33643864
Alignment:
| Q |
56 |
gcttcattgtctctatgttgtggattgtatatgatagtatctattgttgtggttggtttagtaccttactatgatatcaatcctaacactcctatatctt |
155 |
Q |
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|||||| ||| ||||||||||||| |||||||| | || ||| ||||||||||||||||||||||||| |||| ||| ||||| | || || ||||| | |
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| T |
33643724 |
gcttcactgtttctatgttgtggaatgtatatgctggtctctgttgttgtggttggtttagtaccttattatgctattgatcctgatacccccatatcct |
33643823 |
T |
|
| Q |
156 |
ctgcttttgctgccaatggaatgcaatgggcagcgtaagtt |
196 |
Q |
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|||| ||| | | | |||| ||||||||||| ||||||||| |
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| T |
33643824 |
ctgcattttccgaccatgggatgcaatgggccgcgtaagtt |
33643864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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