View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_181 (Length: 239)
Name: NF9366_low_181
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_181 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29610074 - 29609851
Alignment:
| Q |
1 |
atgcgatcttcaaccgtttcagtgggattcctatacacggaatccatgtatctgacttagttcttgctatattcactgtgatgcttgttttcagtagctg |
100 |
Q |
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| T |
29610074 |
atgcgatcttcaaccgtttcagtgggattcctatacacggaatccatgtatctgacttagttcttgctatattcactgtgatgcttgttttcagtagctg |
29609975 |
T |
|
| Q |
101 |
tttcaacagatctgatggctaaatggtgaaatggtacaaccttaatttatgaacttagttccagggcacgcacttttattatacattaaaaaacaaaact |
200 |
Q |
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| T |
29609974 |
tttcaacagatctgatgtctaaatggtgaaatggtacaaccttaatttatgaacttagttccagggcacgcacttttattatacattaaaaaacaaaact |
29609875 |
T |
|
| Q |
201 |
ttcggctgcatgtaagtatttaat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
29609874 |
ttcggctgcatgtaagtatttaat |
29609851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 29584840 - 29585058
Alignment:
| Q |
8 |
cttcaaccgtttcagtgggattcctatacacggaatccatgtatctgacttagttcttgctatattcactgtgatgcttgttttcagtagctgtttcaac |
107 |
Q |
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| T |
29584840 |
cttcaaccggttcagcgggattcatatacacagaatccatgcaactgactgagttcttgctataaacactgtgatgcttgtttgcagttactgttactgc |
29584939 |
T |
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| Q |
108 |
agatctgatggctaaatggtgaaatggtacaaccttaatttatgaacttagttcca--gggcacgcacttttattatacatt---aaaaaacaaaacttt |
202 |
Q |
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| T |
29584940 |
agatttgatatccaaatggtgaaatggaacaactctaatttatgaacttagcctcagggggaacgtactttgattaaacattttaataaaaagaaacttt |
29585039 |
T |
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| Q |
203 |
cggctgcatgtaagtattt |
221 |
Q |
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| T |
29585040 |
cggctgcatgtaagtattt |
29585058 |
T |
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