View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_185 (Length: 239)
Name: NF9366_low_185
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_185 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15359859 - 15360081
Alignment:
| Q |
1 |
aagaaaatgctttctctctagttagctttcatcttctctctatcataattaataagaaaattcataaccaaataccgttccagccgtcagggagtctcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
15359859 |
aagaaaatgctttctctctagttagctttcatcttctctctatcataattaataagaaaattcataaccaaataccgttccagctgtcggggaatctcga |
15359958 |
T |
|
| Q |
101 |
gagcaacaacgggctaatgtttcagaaccactgagggatcgggacaccacgtctcctccgaaagccttaagattttgggtagaaatgtggtgtccagtct |
200 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||| |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
15359959 |
gagcaacaacgggctaatgcttctgaaccaccgagagatcggaacaccatgtctcctccgaaagccttaagattttgggttgaaatgtggtgtccggtct |
15360058 |
T |
|
| Q |
201 |
cttggtgaccctggatcatttag |
223 |
Q |
| |
|
|||||||| ||| |||||||||| |
|
|
| T |
15360059 |
cttggtgatcctagatcatttag |
15360081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 8803132 - 8803067
Alignment:
| Q |
8 |
tgctttctctctagttagctttcatcttctctctatcataattaataagaaaattcataaccaaat |
73 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||| |||| |||||| |||| ||||||||| ||||| |
|
|
| T |
8803132 |
tgctctctctctagttagcttccatctactctcaatcacaattaaaaagagaattcataatcaaat |
8803067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 968540 - 968480
Alignment:
| Q |
12 |
ttctctctagttagctttcatcttctctctatcataattaataag-aaaattcataaccaa |
71 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
968540 |
ttctctctagttagcttttatcttctctctatcataaatagaaagaaaaattcataaccaa |
968480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 48362745 - 48362792
Alignment:
| Q |
5 |
aaatgctttctctctagttagctttcatcttctctctatcataattaa |
52 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
48362745 |
aaatgcattctctctagttagcttccatcttctctctatcacaattaa |
48362792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 8689260 - 8689296
Alignment:
| Q |
3 |
gaaaatgctttctctctagttagctttcatcttctct |
39 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
8689260 |
gaaaatgcattctctctagttagctttcatattctct |
8689296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University