View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_187 (Length: 238)
Name: NF9366_low_187
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_187 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33856146 - 33856368
Alignment:
| Q |
1 |
catcatgtccaaatttcaatcattcagcaattctttgtaaacaagaaaacgaaagaaagagaattataccttctcctgataccgcttcggccagcgcagt |
100 |
Q |
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| T |
33856146 |
catcatgtccaaatttcaatcattcagcagttctttgtaaacaagaaaacgaaagaaagagaagtataccttctcctgataccgcttcggccagcgcagt |
33856245 |
T |
|
| Q |
101 |
ttagccacctctattggaattggatcccctataaatttggagttggaaacttcattatcaccaccgtcaacattcatcggatcagattcagtctttggct |
200 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33856246 |
ttagctgcctctattggaattggatcccctagaaatttggagctggaaacttcattatcaccaccgtcaacattcatcggatcggattcagtctttggct |
33856345 |
T |
|
| Q |
201 |
ccttcttaacaccagaagaagct |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33856346 |
ccttcttaacaccagaagaagct |
33856368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 28214181 - 28214027
Alignment:
| Q |
69 |
ccttctcctgataccgcttcggccagcgcagtttagccacctctattggaattggatcccctataaatttggagttggaaacttcattatcaccaccgtc |
168 |
Q |
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|||||||| ||||||| ||||||||||||||||||||| ||| || |||| ||||| | | ||||||||||||||||||||||| |||||| ||||| |
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| T |
28214181 |
ccttctccagataccgtttcggccagcgcagtttagcctcctttaacagaatcggatctctgagaaatttggagttggaaacttcatcatcacccccgtc |
28214082 |
T |
|
| Q |
169 |
aacattcatcggatcagattcagtctttggctccttcttaacaccagaagaagct |
223 |
Q |
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||||||||||||| ||| |||| ||||||||| ||||| | || |||||||||| |
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| T |
28214081 |
aacattcatcggaacagtttcactctttggcttcttctcaccaatagaagaagct |
28214027 |
T |
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