View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_188 (Length: 238)
Name: NF9366_low_188
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_188 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 39272122 - 39272037
Alignment:
| Q |
105 |
tggttgcttttctaagagatagtgcagctcctaaggaaactagaaaacaccaagtaacttcaatttcatacagcgcttctaacaag |
190 |
Q |
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| T |
39272122 |
tggttgcttttctaagagatagtacagctcctaaggaaactagaaaacaccaagtaacttcaatttcatacagcgcttctaacaag |
39272037 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 39272233 - 39272197
Alignment:
| Q |
56 |
ccctataatcgtagaggtagccaccattgaccaaact |
92 |
Q |
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| T |
39272233 |
ccctataatcgtagaggtagccaccattgaccaaact |
39272197 |
T |
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