View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_189 (Length: 237)
Name: NF9366_low_189
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_189 |
 | |
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| [»] scaffold0356 (1 HSPs) |
| | |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 31925117 - 31925330
Alignment:
| Q |
9 |
tttggtgttggtcataatcatctaaaagtttgttttnnnnnnnntatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31925117 |
tttgttgttggtcataatcatctaaaagttcgttttaaaaaaa-tatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
31925215 |
T |
|
| Q |
109 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtct-annnnnnnnnnnnnnngataaatggtcattgataacgtctattgaatggtgaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31925216 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtctgttttttttatttttttgataaatggtcattgataatgtctattgaatggtgaa |
31925315 |
T |
|
| Q |
208 |
tatttactcattaat |
222 |
Q |
| |
|
||||||||||||||| |
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|
| T |
31925316 |
tatttactcattaat |
31925330 |
T |
|
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Target: scaffold0356 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 5640 - 5426
Alignment:
| Q |
9 |
tttggtgttggtcataatcatctaaaagtttgttttnnnnnnnntatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5640 |
tttgttgttggtcataatcatctaaaagttcgttttaaaaaaa-taccatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
5542 |
T |
|
| Q |
109 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtc--tannnnnnnnnnnnnnngataaatggtcattgataacgtctattgaatggtga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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|
| T |
5541 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtctgtttttttttttttttttgataaatggtcattgataatgtctattgaatggtga |
5442 |
T |
|
| Q |
207 |
atatttactcattaat |
222 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
5441 |
atatttactcattaat |
5426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 33857953 - 33857739
Alignment:
| Q |
9 |
tttggtgttggtcataatcatctaaaagtttgttttnnnnnnnntatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857953 |
tttgttgttggtcataatcatctaaaagttcgttttaaaaaaa-tatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
33857855 |
T |
|
| Q |
109 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtc--tannnnnnnnnnnnnnngataaatggtcattgataacgtctattgaatggtga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
33857854 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtctgttttttttttttgttttgataaatggtcattgataatgtctattgaatggtga |
33857755 |
T |
|
| Q |
207 |
atatttactcattaat |
222 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
33857754 |
atatttattcattaat |
33857739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 14108219 - 14108005
Alignment:
| Q |
9 |
tttggtgttggtcataatcatctaaaagtttgttttnnnnnnnntatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
108 |
Q |
| |
|
|||| |||||||||||||||| |||||||| ||||| || ||| |||||||||||||||||||||| ||||| |||| |||||||||| |||| |
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| T |
14108219 |
tttgttgttggtcataatcatataaaagttcgttttaaaaaaa-taccattttgtattttatatattaaaatttaaatactaactgtgtctgaaaatata |
14108121 |
T |
|
| Q |
109 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtc--tannnnnnnnnnnnnnngataaatggtcattgataacgtctattgaatggtga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
14108120 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtctgtttttttttttttttttgataaatggtcattgataatgtctattgaatggtga |
14108021 |
T |
|
| Q |
207 |
atatttactcattaat |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14108020 |
atatttactcattaat |
14108005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 41759935 - 41759721
Alignment:
| Q |
9 |
tttggtgttggtcataatcatctaaaagtttgttttnnnnnnnntatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41759935 |
tttgttgttggtcataatcatctaaaagttcgttttaaaaaaa-tatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtata |
41759837 |
T |
|
| Q |
109 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtc--tannnnnnnnnnnnnnngataaatggtcattgataacgtctattgaatggtga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
41759836 |
tgtatcacttcaagcgcattaaaagttttggtcaatgataatgtctgttttttttttttgttttgataaatggtcattgataatgtctattgaatggtga |
41759737 |
T |
|
| Q |
207 |
atatttactcattaat |
222 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
41759736 |
atatttattcattaat |
41759721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 11815709 - 11815773
Alignment:
| Q |
54 |
atcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtatatgtatcactt |
118 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
11815709 |
atcatcttctattttatttataaaaattaaaatattaacagtgtctgaaaatatatgtaacactt |
11815773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 11816990 - 11817039
Alignment:
| Q |
105 |
tatatgtatcacttcaagcgcattaaaagttttggtcaatgataatgtct |
154 |
Q |
| |
|
|||||||| |||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
11816990 |
tatatgtaacacttcaaacacattaaaagttatggtcaatgataatgtct |
11817039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 16045290 - 16045458
Alignment:
| Q |
53 |
tatcatcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtatatgtatcacttcaagcgcattaaaagttttggtcaatgataatgt |
152 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16045290 |
tatcatcttgtattttatttattaaaattaaaatattaacagtgtctgaaagtatatgtaacacttcaagcgcattaaaagttttggtcaatgataatgt |
16045389 |
T |
|
| Q |
153 |
ct-annnnnnnnnnnnnnngataaatggtcattgataacgtctattgaatggtgaatatttactcatta |
220 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
16045390 |
ctgttttttttttttttttgataaatggtcattgataatgtctattgaatggtgaatatttactcatta |
16045458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 189980 - 190077
Alignment:
| Q |
57 |
atcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtatatgtatcacttcaagcgcattaaaagttttggtcaatgataatgtct |
154 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
189980 |
atcttctattttatttataaaaattaaaatattaacagtgtctgaaaatatatgtaacacttcaagcacattaaaagttatggtcaatgataatgtct |
190077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 189652 - 189696
Alignment:
| Q |
177 |
tggtcattgataacgtctattgaatggtgaatatttactcattaa |
221 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
189652 |
tggtcaatggtaatgtctattgaatggtgaatatttcctcattaa |
189696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 2189 - 2288
Alignment:
| Q |
56 |
catcttgtattttatatattaaaattaaaatattaacagtgtctgaaagtatatgtatcacttcaagcgcattaaaagttttggtcaatgataatgtcta |
155 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
2189 |
catcttctattttatttattaaaattaaaatattaacagtgtctgaaaatatatgtaacacttcaactgcattaaaagttttggttaataataatgtcta |
2288 |
T |
|
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