View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_192 (Length: 236)
Name: NF9366_low_192
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_192 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 1844870 - 1845073
Alignment:
| Q |
10 |
tttggtgttgtgtgtacaagtaagattgaatttagaagaatgcatgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatagatatgga |
109 |
Q |
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| T |
1844870 |
tttggagttgtgtgtacaagtaagattgaatttagaagaatgcatgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatgga |
1844969 |
T |
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| Q |
110 |
atgtttatatctccacaagtatagttgcagccaggtaggacttgttgggattgatttgctgcaactatttctatcaaaagtgctaatgaaaccattatta |
209 |
Q |
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| T |
1844970 |
atgtttatatctccacaagtatagttgcagccaggtaggacttgttgggattgatttgctgcaactgtttctatcaaaagtgctaatgaaaccattatta |
1845069 |
T |
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| Q |
210 |
atgg |
213 |
Q |
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|||| |
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| T |
1845070 |
atgg |
1845073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 1817976 - 1818149
Alignment:
| Q |
47 |
gaatgcatgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatagatatggaatgtttatatctccacaagtatagttgcagccaggta |
146 |
Q |
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| T |
1817976 |
gaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaattgttaaatctccacaggtgtaattgcagcctggta |
1818075 |
T |
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| Q |
147 |
ggacttgttgggattgatttgctgcaactatttctatcaaaagtgctaatgaaaccattattaatggatgcatt |
220 |
Q |
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| T |
1818076 |
ggacttgtttaggttgatcagatgcaactgtttctatcaaaagtgctaatgaaaccattatcaatggatgcatt |
1818149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 1855206 - 1855104
Alignment:
| Q |
53 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatagatatggaatgtttatatctccacaagtatagttgcagccaggtaggactt |
152 |
Q |
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| T |
1855206 |
atgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaacttttacacctccacaggtgtaattgcagcctggtaggactt |
1855107 |
T |
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| Q |
153 |
gtt |
155 |
Q |
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||| |
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| T |
1855106 |
gtt |
1855104 |
T |
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