View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_193 (Length: 236)
Name: NF9366_low_193
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_193 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 11788017 - 11788239
Alignment:
| Q |
14 |
ggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgttatgatcatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11788017 |
ggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttgttggatttggaataccttgtgttgttatgatcatt |
11788116 |
T |
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| Q |
114 |
gctttgattgttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtattcgttgtga |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11788117 |
gctttgattgttttcttgattggaactatcacatataggtttaacatcaatgataataacaagagtccctttcttagaattggtcgtgtattcgtcgtgg |
11788216 |
T |
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| Q |
214 |
ctgcaagaaattggaaaaatacc |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
11788217 |
ctgcaagaaattggaaaaatacc |
11788239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 11800184 - 11800406
Alignment:
| Q |
14 |
ggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgttatgatcatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11800184 |
ggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttgttggatttggaataccttgtgttgttatgatcatt |
11800283 |
T |
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| Q |
114 |
gctttgattgttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtattcgttgtga |
213 |
Q |
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| T |
11800284 |
gctttgattgttttcttgattggaactatcacatataggtttaacatcaatgataataacaagagtccctttcttagaattggtcgtgtattcgtcgtgg |
11800383 |
T |
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| Q |
214 |
ctgcaagaaattggaaaaatacc |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
11800384 |
ctgcaagaaattggaaaaatacc |
11800406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 11784186 - 11784408
Alignment:
| Q |
14 |
ggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgttatgatcatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11784186 |
ggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgtaatgatcatt |
11784285 |
T |
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| Q |
114 |
gctttgattgttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtattcgttgtga |
213 |
Q |
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|||||||||||||||||| |||||||||| || |||||||||||||| || ||||| |||| |||| ||||||||||||||||| ||||| |||| | |
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| T |
11784286 |
gctttgattgttttcttgcttggaacaatgacctataggtttaacattaaggataatgacaattgtccttttcttagaattggtcgagtatttgttgcgg |
11784385 |
T |
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| Q |
214 |
ctgcaagaaattggaaaaatacc |
236 |
Q |
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||| |||||||||| ||||||| |
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| T |
11784386 |
ctgtaagaaattggcgaaatacc |
11784408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 11697999 - 11698218
Alignment:
| Q |
14 |
ggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgttatgatcatt |
113 |
Q |
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||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
11697999 |
ggttgcaggtgccgcggcaacactttcgatcttgacttatatacaagataactatagttgggttcttggatttggaatcccttgtgttataatgatcata |
11698098 |
T |
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| Q |
114 |
gctttgattgttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtattcgttgtga |
213 |
Q |
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|| ||||||||||||||| |||||||||| || |||||||||||||| || |||| |||||||||| ||||||||||||||||||||||| |||| | |
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| T |
11698099 |
gccttgattgttttcttgcttggaacaatgacctataggtttaacattaaggataaagacaagagtccttttcttagaattggtcgtgtatttgttgcgg |
11698198 |
T |
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| Q |
214 |
ctgcaagaaattggaaaaat |
233 |
Q |
| |
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|||| ||||||||| ||||| |
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| T |
11698199 |
ctgcgagaaattggcaaaat |
11698218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 11676511 - 11676675
Alignment:
| Q |
41 |
aatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgattgttttcttgattggaaca |
140 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | | |||||||| |
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| T |
11676511 |
aatcttgaactatatacaagataacattagttgggttcttggatttggaatcccttgtgttgtaatgatcattgctttgattgttttttggcttggaaca |
11676610 |
T |
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| Q |
141 |
atcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatt |
205 |
Q |
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| ||||||||||||| ||| || ||||| |||||||||||||||||||||||||||||||||| |
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| T |
11676611 |
aggacatataggtttagcattaaggataatgacaagagtccctttcttagaattggtcgtgtatt |
11676675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 11684790 - 11684954
Alignment:
| Q |
41 |
aatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgattgttttcttgattggaaca |
140 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | | |||||||| |
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| T |
11684790 |
aatcttgaactatatacaagataacattagttgggttcttggatttggaatcccttgtgttgtaatgatcattgctttgattgttttttggcttggaaca |
11684889 |
T |
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| Q |
141 |
atcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatt |
205 |
Q |
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| ||||||||||||| ||| || ||||| |||||||||||||||||||||||||||||||||| |
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| T |
11684890 |
aggacatataggtttagcattaaggataatgacaagagtccctttcttagaattggtcgtgtatt |
11684954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 11707735 - 11707898
Alignment:
| Q |
42 |
atcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgattgttttcttgattggaacaa |
141 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||| ||||||||| |
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| T |
11707735 |
atcttgaactatatacaagataacattagttgggttcttggatttggaatcccttgtgttgtaatgatcatcgctttgattgtttttttgcttggaacaa |
11707834 |
T |
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| Q |
142 |
tcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatt |
205 |
Q |
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||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||| |
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| T |
11707835 |
ggacatataggtttaacattaaggttaatgacaagagtccctttattagaattggtcgtgtatt |
11707898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 19771 - 19993
Alignment:
| Q |
14 |
ggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgttatgatcatt |
113 |
Q |
| |
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||||||||| ||| ||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
19771 |
ggttgcaggggccacggcaacacttccgatcttgacttatattcaagataactatagctgggttcttggatttggaataccttgtgttataatgatcatt |
19870 |
T |
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| Q |
114 |
gctttgattgttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtattcgttgtga |
213 |
Q |
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|| |||||| |||||||| | ||||||| ||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||||||||||| || |
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| T |
19871 |
gccttgattattttcttgctcggaacaaggacatataggtttaacattaaggataataataagagtccttttcttagaatcggtcgtgtattcgctgcag |
19970 |
T |
|
| Q |
214 |
ctgcaagaaattggaaaaatacc |
236 |
Q |
| |
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||| |||||||||| ||||||| |
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| T |
19971 |
ctgtaagaaattggcgaaatacc |
19993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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