View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_196 (Length: 234)
Name: NF9366_low_196
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_196 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4954902 - 4955112
Alignment:
| Q |
1 |
tgaactaatacttgaaaatcatacgaaactccaacgatgattgacgctggcactaaaagtagaagttcaaggtcctccttattgtaaggtttgagatagt |
100 |
Q |
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| T |
4954902 |
tgaactaatacttgaaaatcatacaaaactccaacaatgattgacgctggaactaaaagtagaagttcaaggtcctccttattgtaaggtttgagatagt |
4955001 |
T |
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| Q |
101 |
gaccaaatcggtgttagtttgacaaaaataagagaaaacatatatatgtgcctcaaaattcagctcatatttgtttccctttgtttttattaaaacaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955002 |
gaccaaatcggtgttagtttgacaaaaataagagaaaatatatatgtgtgcctcaaaattcagctcatatttgtttccctttgtttttattaaaacaaca |
4955101 |
T |
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| Q |
201 |
ccgattaggcc |
211 |
Q |
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||||||||||| |
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| T |
4955102 |
ccgattaggcc |
4955112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0578 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 889 - 1100
Alignment:
| Q |
1 |
tgaactaatacttgaaaatcatacgaaactccaacgatgattgacgctggcactaaaa-gtagaagttcaaggtcctccttattgtaaggtttgagatag |
99 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
889 |
tgaactaatacttgaaaatcatacaaaactccaacaatgattgacgctggaactaaaaagtagaagttcaaggtcctccttattgtaaggtttgagatag |
988 |
T |
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| Q |
100 |
tgaccaaatcggtgttagtttgacaaaaataagagaaaacatatatatgtgcctcaaaattcagctcatatttgtttccctttgtttttattaaaacaac |
199 |
Q |
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| T |
989 |
tgaccaaatcggtgttagtttgacaaaaataagagaaaatatatatgtgtgcctcaaaattcagctcatatttgtttccctttgtttttattaaaacaac |
1088 |
T |
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| Q |
200 |
accgattaggcc |
211 |
Q |
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| T |
1089 |
accgattaggcc |
1100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 5760740 - 5760683
Alignment:
| Q |
111 |
gtgttagtttgacaaaaataagagaaaacatatatatgtgcctcaaaattcagctcat |
168 |
Q |
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|||| |||||| |||||| ||||||||| |||||||||||| ||||| |||| ||||| |
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| T |
5760740 |
gtgtgagtttggcaaaaacaagagaaaagatatatatgtgcttcaaagttcaactcat |
5760683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 3096326 - 3096286
Alignment:
| Q |
148 |
gtgcctcaaaattcagctcatatttgtttccctttgttttt |
188 |
Q |
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| T |
3096326 |
gtgcctcaaaactcagctcatatttgttttcgtttgttttt |
3096286 |
T |
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