View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_20 (Length: 504)
Name: NF9366_low_20
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 25 - 432
Target Start/End: Complemental strand, 42822161 - 42821754
Alignment:
| Q |
25 |
tacgccaaattttattgtttcgtatcttagaaatgcaccataaatttataattattacttcatcaccaatgatagaattagaaatgttgatgataatgca |
124 |
Q |
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| T |
42822161 |
tacgccaaattttattgtttcgtatcttacaaatgcaccataaatttataattattacttcatcaccaatgatacaattagaaatgttgatgataatgca |
42822062 |
T |
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| Q |
125 |
tcaggattcaaccttggctgcaatgttgttgaggccaggaccattattagcattaaccagtgcacaattcattgagaatgttgaagtggagaaggtgccc |
224 |
Q |
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| T |
42822061 |
tcaggattcaaccttggctgcaatgttgttgaggccaggaccattattagcattaaccagggcacaattcatagagaatgttgaagtggagaaggtgccc |
42821962 |
T |
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| Q |
225 |
cgtgtgtacataaagacaaggcaagacaatgtagtaaaaccaaagcaacaggaagccatgataaataggtggccaccaggtagtgtgtatgaattggaca |
324 |
Q |
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| T |
42821961 |
cgtgtgtacataaagacaagacaagacaatgtagtaaaaccaaagcaacaggaagccatgataaataggtggccaccaggtagtgtgtatgaattggaca |
42821862 |
T |
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| Q |
325 |
gtgaccatagtcccttcttctctaccccatttatactctttggtttgcttgttaaggctgcaacttttcacgttggatgcaactagttgaagtcaacaca |
424 |
Q |
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| T |
42821861 |
gtgaccatagtcccttcttctctaccccatttatactctttggtttgcttgttaaagctgcaacttttcacgttggatgcaactagttgaagtcaacaca |
42821762 |
T |
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| Q |
425 |
gtcaccat |
432 |
Q |
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| T |
42821761 |
gtcaccat |
42821754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 42821699 - 42821667
Alignment:
| Q |
454 |
ggcattcaactgaaacgtatgagtagtaattca |
486 |
Q |
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| T |
42821699 |
ggcattcaactgaaaagtatgagtagtaattca |
42821667 |
T |
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