View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_208 (Length: 224)
Name: NF9366_low_208
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_208 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 6739609 - 6739412
Alignment:
| Q |
11 |
ggagcacagagccaggaggaagagttgccactgttcaggcaaatcaaaatcaaatttttgaggatgcagaagtgacagacacaggtcatgctttgcatgg |
110 |
Q |
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| T |
6739609 |
ggagcgcaaagccaggaggaagagctgccactgttcaggcaaatcaaaatcaaatttttgaggaagcagaagtaacagacacaggtcatgctttgcatgg |
6739510 |
T |
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| Q |
111 |
gatgcgattcaacgggacagaaccatcagtcatggctggtaataaacagatccaat-gggtcttggacagtggggagtctcatcacatgaccccttct |
207 |
Q |
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| T |
6739509 |
gatgcgattcaaggggacagaatcatcagtcatggctggtaataaacagatccaatggggtcttggacagtggggcgtctcatcacatgaccccttct |
6739412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 52081204 - 52081007
Alignment:
| Q |
11 |
ggagcacagagccaggaggaagagttgccactgttcaggcaaatcaaaatcaaatttttgaggatgcagaagtgacagacacaggtcatgctttgcatgg |
110 |
Q |
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| T |
52081204 |
ggagcgcaaagccatgaggaagagctgccactgttcaggcaaatcaaaatcaaatttttgaggaagcagaagtaacagacacaggtcatgctttgcatgg |
52081105 |
T |
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| Q |
111 |
gatgcgattcaacgggacagaaccatcagtcatggctggtaataaacagatccaat-gggtcttggacagtggggagtctcatcacatgaccccttct |
207 |
Q |
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| T |
52081104 |
gatgcgattcaaggggacagaatcatcagtcatggctggtaataaacagatccaatggggtcttggacagtggggcgtctcatcacatgaccccttct |
52081007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 33723447 - 33723383
Alignment:
| Q |
141 |
catggctggtaataaacagatccaatgggtcttggacagtggggagtctcatcacatgacccctt |
205 |
Q |
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| T |
33723447 |
catggctggtaataaagagatccaatggatcttggacagtggcgcatctcatcacatgactcctt |
33723383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 33796918 - 33796854
Alignment:
| Q |
141 |
catggctggtaataaacagatccaatgggtcttggacagtggggagtctcatcacatgacccctt |
205 |
Q |
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| T |
33796918 |
catggctggtaataaagagatccaatggatcttggacagttgcgcatctcatcacatgactcctt |
33796854 |
T |
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