View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_210 (Length: 221)
Name: NF9366_low_210
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_210 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11788521 - 11788301
Alignment:
| Q |
1 |
atcaacaatgagaattaagttcaatgctagaattgattactacagtgtaaccgttactataatatgttccatagaatgcatttcataaaactccaaagac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11788521 |
atcaacaatgagaattaagttcaatgctcgaattgattactacagtgtaaccgttactataatatgtttcatagaatgcatttcataaaactccaaagac |
11788422 |
T |
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| Q |
101 |
gaattcaacatgagtcctataattaagtatttcatcatatttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcatt |
200 |
Q |
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| T |
11788421 |
gaattcaacatgagtcctataattaagtatttcatcatatttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcatt |
11788322 |
T |
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| Q |
201 |
gttattcttacttgaattgtt |
221 |
Q |
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||||||||||||||| ||||| |
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| T |
11788321 |
gttattcttacttgacttgtt |
11788301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11800688 - 11800468
Alignment:
| Q |
1 |
atcaacaatgagaattaagttcaatgctagaattgattactacagtgtaaccgttactataatatgttccatagaatgcatttcataaaactccaaagac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11800688 |
atcaacaatgagaattaagttcaatgctcgaattgattactacagtgtaaccgttactataatatgtttcatagaatgcatttcataaaactccaaagac |
11800589 |
T |
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| Q |
101 |
gaattcaacatgagtcctataattaagtatttcatcatatttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcatt |
200 |
Q |
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| T |
11800588 |
gaattcaacatgagtcctataattaagtatttcatcatatttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcatt |
11800489 |
T |
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| Q |
201 |
gttattcttacttgaattgtt |
221 |
Q |
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| T |
11800488 |
gttattcttacttgacttgtt |
11800468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11784687 - 11784470
Alignment:
| Q |
1 |
atcaacaatgagaattaagttcaatgctagaattgattactacagtgtaaccgttactataatatgttccatagaatgcatttcataaaactccaaagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
11784687 |
atcaacaatgagaattaagttcaatgctagaattgattgttatagcgtaaccgttactataatatgtttcatagaatgcattttgtaaaaccacaaagac |
11784588 |
T |
|
| Q |
101 |
gaattcaacatgagtcctataattaagtatttcatcatatttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcatt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||| ||||||| ||| |
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| T |
11784587 |
gaattcaacatgagtcctataat---gtatttcatcatatttgctgctttaagaataacttactagacataatattgaaaaacaaacaaaaattagtatt |
11784491 |
T |
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| Q |
201 |
gttattcttacttgaattgtt |
221 |
Q |
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| T |
11784490 |
gttattcttacttgaattgtt |
11784470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 11698376 - 11698283
Alignment:
| Q |
127 |
gtatttcatcatatttgctgctttaagaatcacttgctagatatagaattgaaaaacaaacagaaattagcattgttattcttacttgaattgtt |
221 |
Q |
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| T |
11698376 |
gtatttcattatattttctgctttaagaataacttgctagacatata-ttgaaaaacaagcagaaattaacattgttattcttacttgaattgtt |
11698283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 221
Target Start/End: Complemental strand, 11676796 - 11676765
Alignment:
| Q |
190 |
aaattagcattgttattcttacttgaattgtt |
221 |
Q |
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| T |
11676796 |
aaattagcattgttattcttacttgaattgtt |
11676765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 221
Target Start/End: Complemental strand, 11685075 - 11685044
Alignment:
| Q |
190 |
aaattagcattgttattcttacttgaattgtt |
221 |
Q |
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| T |
11685075 |
aaattagcattgttattcttacttgaattgtt |
11685044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 11708035 - 11707988
Alignment:
| Q |
174 |
attgaaaaacaaacagaaattagcattgttattcttacttgaattgtt |
221 |
Q |
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| T |
11708035 |
attgaaaaacaagaataagttagcattgttattcttacttgaattgtt |
11707988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 20088 - 20046
Alignment:
| Q |
179 |
aaaacaaacagaaattagcattgttattcttacttgaattgtt |
221 |
Q |
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| T |
20088 |
aaaacaagcagaaatcagcatttttattcttacttgaattgtt |
20046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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