View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_22 (Length: 484)
Name: NF9366_low_22
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Complemental strand, 22190430 - 22189968
Alignment:
| Q |
7 |
agattattctccttaacgaaccggctccatccttttgttagaacgtagctttgactactgttccaataagagtatctaaatctccacactttccctccaa |
106 |
Q |
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| T |
22190430 |
agattcttctccttaacgaaccggctccatccttttgttagaacgtaactttgactactgttccaataagagtatctaaatctccacactttccctccaa |
22190331 |
T |
|
| Q |
107 |
tgtcttcaaaattcaaaagcactcccttaccagctgccgatgcgcttccctggacgcaatcggctttctgtaatggaaagtgcttctcagcgtgctgttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22190330 |
tgtcttcaaaattcaaaagcactcccttaccagctgccgatgcgcttccctggacgcaatcggctttctgtaatggaaagtgcttctcagcatgctgttt |
22190231 |
T |
|
| Q |
207 |
tggtataactaaccgatttaatttcccaacgtcgctcggggtaacaaccttttcgaacaaagcttcacgtgcctttttatcggtattgtaagccgagctg |
306 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
22190230 |
cggtataactaaccgatttaacttcccaacgtcgctcggggtaacaaccttttcgaacagagcttcacgtgcctttttatcggtattgtatgccgagctg |
22190131 |
T |
|
| Q |
307 |
gcaaagttaacagagccagaacagtcatggcttcgtctgctgacgaagccatgactgcgcttgctctgttcaagctcgtcattgtatgtatgttttctta |
406 |
Q |
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| T |
22190130 |
gcaaagttaacagagtcagaacagccatggcttcgtctgctgacgaagccatgactgcgcttgctctgttccagttcgtcattgtatgtatgttttctta |
22190031 |
T |
|
| Q |
407 |
acatgtccacaatctctgacttggaatgcgagttgagaaactcgagttccatgtcatcgttgt |
469 |
Q |
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| T |
22190030 |
acatgtccacaatctctgacttggaatgcgagttgagaaactcgagttccatgtcatcgttgt |
22189968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 41952093 - 41952213
Alignment:
| Q |
7 |
agattattctccttaacgaaccggctccatccttttgttagaacgtagctttgactactgttccaataagagtatctaaatctccacactttccctccaa |
106 |
Q |
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||||| ||||||||||||||||||||||||||||| || | ||| || || || ||||| ||||||||||| || | ||||| ||||||||||||||||| |
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| T |
41952093 |
agattcttctccttaacgaaccggctccatcctttggtcaaaacataactctggctactattccaataagaataacgaaatcgccacactttccctccaa |
41952192 |
T |
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| Q |
107 |
tgtcttcaaaattcaaaagca |
127 |
Q |
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| T |
41952193 |
cgtcttcgaaattcaaaagca |
41952213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 25691039 - 25690990
Alignment:
| Q |
31 |
ctccatccttttgttagaacgtagctttgactactgttccaataagagta |
80 |
Q |
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| T |
25691039 |
ctccaaccttttgttagaacatagctttgactactgttccaataagagta |
25690990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 8775033 - 8775114
Alignment:
| Q |
13 |
ttctccttaacgaaccggctccatccttttgttagaacgtagctttgactactgttccaataagagtatctaaatctccaca |
94 |
Q |
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| T |
8775033 |
ttctctttaacaaaacggctccaaccttttgtcataacatagctttggctactgttccaataagagtatctaaatctccaca |
8775114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 48596135 - 48596071
Alignment:
| Q |
13 |
ttctccttaacgaaccggctccatccttttgttagaacgtagctttgactactgttccaataaga |
77 |
Q |
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|||||||||||||| |||||||| |||||||| | || || || || ||||||||||||||||| |
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| T |
48596135 |
ttctccttaacgaaacggctccaaccttttgtcatcacataactctggctactgttccaataaga |
48596071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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