View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_24 (Length: 482)

Name: NF9366_low_24
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_24
NF9366_low_24
[»] chr5 (8 HSPs)
chr5 (19-453)||(13879823-13880255)
chr5 (133-208)||(13875730-13875805)
chr5 (142-200)||(13885860-13885918)
chr5 (386-434)||(43358252-43358300)
chr5 (24-59)||(13875605-13875640)
chr5 (384-434)||(9893692-9893742)
chr5 (142-195)||(13870759-13870812)
chr5 (23-59)||(13885720-13885756)
[»] chr8 (1 HSPs)
chr8 (383-434)||(39433399-39433450)
[»] chr3 (5 HSPs)
chr3 (392-434)||(40962720-40962762)
chr3 (381-415)||(29687069-29687103)
chr3 (384-434)||(36354540-36354590)
chr3 (381-434)||(38330773-38330826)
chr3 (385-422)||(43316634-43316671)
[»] chr4 (3 HSPs)
chr4 (391-434)||(44383445-44383488)
chr4 (386-434)||(35021488-35021536)
chr4 (397-429)||(40849657-40849689)
[»] scaffold0086 (1 HSPs)
scaffold0086 (392-434)||(19076-19118)
[»] chr1 (2 HSPs)
chr1 (385-422)||(7308454-7308491)
chr1 (383-415)||(26834509-26834541)
[»] chr6 (1 HSPs)
chr6 (386-434)||(9444767-9444815)
[»] chr2 (1 HSPs)
chr2 (394-434)||(39986429-39986469)


Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 13879823 - 13880255
Alignment:
Q  19 gtaagaggaagaaaggaggcgggaaaatgccattgtgttgacagttgacagagtgagattttcttgggattgctttctctctttatcgcttgcttttagg 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  13879823 gtaagaggaagaaaggaggcgggaaaatgccattgtgttaacagttgacag--tgagattttcttgggattgctttctctctttatcgcttgcttttagg 13879920  T
Q  119 gtttttgtagtgaaaaatggcttaagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgacgtgtcactttttcattgaatcac 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13879921 gtttttgtagtgaaaaatggctttagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgacgtgtcactttttcattgaattac 13880020  T
Q  219 tctcaccatataacttagttcattcatcatttttaattcatttagttcttttc-ttttttagagttaatcactcctcatagtctatcggattagtagtta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13880021 tctcaccatataacttagttcattcatcatttttaattcatttagttcttttctttttttagagttaatcactcctcatagtctatcggattagtagtta 13880120  T
Q  318 ataaatttcaacatttatttatgtaaaaatcatgagacaatgcattattgaataaagtctacttttatttgtgctcgtgagcttagctcagttgatataa 417  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||      
T  13880121 ataaatttcaacatttatttatgtaaaaatcatgagac-acgcattattgaataaagtctactcttatttctgctcgtgagcttagttcagttgatatgg 13880219  T
Q  418 ataatatataaaatatgaactccggccaccaccaaa 453  Q
    | |||| ||||||||||||| |||||||||||||||    
T  13880220 acaatacataaaatatgaaccccggccaccaccaaa 13880255  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 13875730 - 13875805
Alignment:
Q  133 aaatggcttaagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgacgtgtcactttttc 208  Q
    |||||||||||||||||||||||||||||||||||||| || ||||  |||||| || |||||||||||| |||||    
T  13875730 aaatggcttaagaatgttctagaaggatactaacttggttaccaagccactttgttttgtgacgtgtcacgttttc 13875805  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 13885860 - 13885918
Alignment:
Q  142 aagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgacgtgtc 200  Q
    ||||| ||||||||||||||||| |||||||| ||||  ||||||||||||||||||||    
T  13885860 aagaaggttctagaaggatactaccttggctaccaagccactttgcttagtgacgtgtc 13885918  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 43358252 - 43358300
Alignment:
Q  386 ttgtgctcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    |||| ||||||||||||||||||||| |||| ||||| |||||||||||    
T  43358252 ttgtcctcgtgagcttagctcagttggtatagataatgtataaaatatg 43358300  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 13875605 - 13875640
Alignment:
Q  24 aggaagaaaggaggcgggaaaatgccattgtgttga 59  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13875605 aggaagagaggaggcgggaaaatgccattgtgttga 13875640  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 9893742 - 9893692
Alignment:
Q  384 atttgtgctcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    |||||| |||| ||||||||||||||||||||| |||||  ||||||||||    
T  9893742 atttgtcctcgcgagcttagctcagttgatatagataatgcataaaatatg 9893692  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 13870759 - 13870812
Alignment:
Q  142 aagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgac 195  Q
    ||||| ||||||||| |||||||||||||||| ||||  |||||||||| ||||    
T  13870759 aagaaggttctagaatgatactaacttggctaccaagccactttgcttactgac 13870812  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
Q  23 gaggaagaaaggaggcgggaaaatgccattgtgttga 59  Q
    |||||||| |||| |||||||||||||||||||||||    
T  13885720 gaggaagagaggaagcgggaaaatgccattgtgttga 13885756  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 39433399 - 39433450
Alignment:
Q  383 tatttgtgctcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    ||||||| ||||||||||||||||||||||||| || |||| ||||||||||    
T  39433399 tatttgtcctcgtgagcttagctcagttgatatgaacaatacataaaatatg 39433450  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 40962720 - 40962762
Alignment:
Q  392 tcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    |||||||||||||||||||| |||||| |||||||||||||||    
T  40962720 tcgtgagcttagctcagttgctataaacaatatataaaatatg 40962762  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 29687069 - 29687103
Alignment:
Q  381 tttatttgtgctcgtgagcttagctcagttgatat 415  Q
    ||||||||| |||||||||||||||||||||||||    
T  29687069 tttatttgtcctcgtgagcttagctcagttgatat 29687103  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 36354590 - 36354540
Alignment:
Q  384 atttgtgctcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    |||||| || |||||||||||||||||||||| || ||||||||| |||||    
T  36354590 atttgttcttgtgagcttagctcagttgatatgaaaaatatataatatatg 36354540  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 38330826 - 38330773
Alignment:
Q  381 tttatttgtgctcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    |||||||||  |||||||||||||||| ||| |||||| ||||||||| |||||    
T  38330826 tttatttgtcttcgtgagcttagctcaattggtataaacaatatataatatatg 38330773  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 422
Target Start/End: Complemental strand, 43316671 - 43316634
Alignment:
Q  385 tttgtgctcgtgagcttagctcagttgatataaataat 422  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  43316671 tttgtcctcgtgagcttagctcagttgatatagataat 43316634  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 434
Target Start/End: Original strand, 44383445 - 44383488
Alignment:
Q  391 ctcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||    
T  44383445 ctcgtgaacttagctcagttggtataaacaatatataaaatatg 44383488  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 35021536 - 35021488
Alignment:
Q  386 ttgtgctcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    |||| |||||||||||||||||||||||||  | |||| ||||||||||    
T  35021536 ttgtcctcgtgagcttagctcagttgatatggacaatacataaaatatg 35021488  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 429
Target Start/End: Original strand, 40849657 - 40849689
Alignment:
Q  397 agcttagctcagttgatataaataatatataaa 429  Q
    |||||||||||||||||||||||||| ||||||    
T  40849657 agcttagctcagttgatataaataatgtataaa 40849689  T

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Target: scaffold0086 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 19118 - 19076
Alignment:
Q  392 tcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    ||||||||||| |||||||| |||||| |||||||||||||||    
T  19118 tcgtgagcttaactcagttggtataaacaatatataaaatatg 19076  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 422
Target Start/End: Complemental strand, 7308491 - 7308454
Alignment:
Q  385 tttgtgctcgtgagcttagctcagttgatataaataat 422  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  7308491 tttgtactcgtgagcttagctcagttgatatagataat 7308454  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 26834509 - 26834541
Alignment:
Q  383 tatttgtgctcgtgagcttagctcagttgatat 415  Q
    ||||||| |||||||||||||||||||||||||    
T  26834509 tatttgtcctcgtgagcttagctcagttgatat 26834541  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 9444767 - 9444815
Alignment:
Q  386 ttgtgctcgtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    |||||||||||||||||||||||||| |||  |||| |||||| |||||    
T  9444767 ttgtgctcgtgagcttagctcagttggtatggataaaatataatatatg 9444815  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 39986469 - 39986429
Alignment:
Q  394 gtgagcttagctcagttgatataaataatatataaaatatg 434  Q
    |||||||||||||| || |||||||||||| ||||||||||    
T  39986469 gtgagcttagctcacttaatataaataatacataaaatatg 39986429  T

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