View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_28 (Length: 476)
Name: NF9366_low_28
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 2744960 - 2745410
Alignment:
| Q |
17 |
aaaatcgttattgtatgtttgtgaactcgatttaaaactatatatgattttaatccgtatatgtaacacaatgatatgaattt-cttatatgatgctgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2744960 |
aaaatcgttattgtatgtttgtgaactcgatttaaaactatatatgattttaattcgtatatgtaacacaatgatatgaattttcttatatgatgctgaa |
2745059 |
T |
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| Q |
116 |
aatgaaaaatcttgaacatagaacannnnnnnnnnnnnnnnnnnnnnnngtcaagatcataggttgtataattgttatatgattgcataaaataatcaca |
215 |
Q |
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| T |
2745060 |
aatgaaaaatcttgaacatagaacaatatatcatatatatgtatatatagtcaagatcataggttgtataattgttatatgattgcttaaaataatcaca |
2745159 |
T |
|
| Q |
216 |
tggctttatattttagtcttgattattatgttttgtataggttcaattttgatgatgaattgtcactaatggaatttaacctaattttgctaggttttta |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2745160 |
tgactttatattttagtcttgattattatgttttgtataggttcaattttgatgatgaattgtcactaatggaatttaacctaattttgctaggttttta |
2745259 |
T |
|
| Q |
316 |
gataaagcagcatttattacaccaaaagatttgaagcaaatggaagaaaataaatgcagtccatggtttctatcaactgtgacacaagtagaagaagtga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2745260 |
gataaagcagcatttattacaccaaaagatttgaagcaaatggaagaaaataaatgcagtccatggtttctatcaactgtgacacaagtagaagaagtga |
2745359 |
T |
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| Q |
416 |
aatgcatattaagattactcccaatttggttatgcactatattattctctg |
466 |
Q |
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| T |
2745360 |
aatgcatattaagattactcccaatttggttatgcactatattattctctg |
2745410 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 8469730 - 8469791
Alignment:
| Q |
391 |
actgtgacacaagtagaagaagtgaaatgcatattaagattactcccaatttggttatgcac |
452 |
Q |
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|||||||||||||| |||||||||||||| || || ||| || | ||| ||||||||||||| |
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| T |
8469730 |
actgtgacacaagttgaagaagtgaaatgtattttgagactattgccagtttggttatgcac |
8469791 |
T |
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