View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_30 (Length: 457)
Name: NF9366_low_30
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_30 |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 58893 - 59322
Alignment:
| Q |
17 |
atactaactaagcttttttaacttgaagcaagaacttttaacaatttctaaataggtgtatcatataattagttaccattgatgagcttttaacattttc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
58893 |
atactaactaagcttttttaacttgaagcaagaacttttaacaatttctaaataggtgtatcatataattagttaacattgatgagcgtttaacattttc |
58992 |
T |
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| Q |
117 |
actcaatcagaattagatacatataactactat----gtttctagatgaaaatcaaatgccctttaatcgcatttagagtgaaaaccataccataacaga |
212 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
58993 |
actcaatcagaattagatccatataactactatatatgtttctagatgaaaatcaaatgccctttaatcgcatttagagtgaaaaccataccataacaga |
59092 |
T |
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| Q |
213 |
actttgcacatatttcaaaagcaacaggtcctccaggaatgtcgtggatgtgaatttcgtcgttatcctcatctgtgtttgaaaccaac---ctttgcaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
59093 |
actttgcacatatttcaaaagcaacaggtcctccaggaatgtcgtggatgtgaatttcgtcgttatcctcatctgtgtttgaaaccaaccttctttgcaa |
59192 |
T |
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| Q |
310 |
gcgtaaactttttctatttgacatatatttgatctactttgcacatattggtttatgataccacactggcataatttgatctactctaaatgcgactaaa |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
59193 |
gcgtaaactttttctatttgacatatatttgatctactttgcacatattggtttatgatacaacactagcataatttgatctactctaaatgcgactaaa |
59292 |
T |
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| Q |
410 |
gtggtggtccatgtaagagcactacctttg |
439 |
Q |
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| T |
59293 |
gtggtggtccatgtaagagcactacctttg |
59322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 58022 - 58161
Alignment:
| Q |
182 |
gcatttagagtgaaaaccataccataacagaactttgcacatatttcaaaagcaacaggtcctccaggaatgtcgtggatgtgaatttcgtcgttatcct |
281 |
Q |
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| T |
58022 |
gcatttagagtgacaaccataccataacagaacttcgcacatatttcaaaagtaacaggtcatccaggaatgtcatggatgtgaatttcgtcgttctcct |
58121 |
T |
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| Q |
282 |
catctgtgtttgaaaccaacctttgcaagcgtaaactttt |
321 |
Q |
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| T |
58122 |
catatgtggttgaaaccaacttttgcaagcgtaaactttt |
58161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 182 - 321
Target Start/End: Complemental strand, 5532476 - 5532337
Alignment:
| Q |
182 |
gcatttagagtgaaaaccataccataacagaactttgcacatatttcaaaagcaacaggtcctccaggaatgtcgtggatgtgaatttcgtcgttatcct |
281 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
5532476 |
gcatttagagtgacaaccataccataacagaactttgcacatatttcaaaagcaacaggtcccccaggaatgtcgtggatgtgaatttcgtcgttctcct |
5532377 |
T |
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| Q |
282 |
catctgtgtttgaaaccaacctttgcaagcgtaaactttt |
321 |
Q |
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| T |
5532376 |
catctgtgtttgaaaccaacttttgcaagcgtaaactttt |
5532337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 5531764 - 5531602
Alignment:
| Q |
18 |
tactaactaagctttttt--aacttgaagcaagaacttttaacaatttctaaataggtg------tatcatataattagttaccattgatgagcttttaa |
109 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||| ||| ||||||||||||| ||||| ||||||||||| |
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| T |
5531764 |
tactaactaagcttttttttaacttgaagcaagaatttttaacaatttttaaataagtggtatcatataatataattagttaacattgctgagcttttaa |
5531665 |
T |
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| Q |
110 |
cattttcactcaatcagaattagatacatataactactatgtttctagatgaaaatcaaatgc |
172 |
Q |
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| T |
5531664 |
cattttcactcaatcaaaattagatccatataactactatgtttcaagatgagaatcaaatgc |
5531602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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