View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_32 (Length: 452)
Name: NF9366_low_32
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 148 - 416
Target Start/End: Original strand, 52219271 - 52219530
Alignment:
| Q |
148 |
gcaaaggacaaataagctactatgtcatagggtttgaataataaaaagttgaatttaatggcagacattgaatttgaatgaattgaaaagagaaagagaa |
247 |
Q |
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| T |
52219271 |
gcaaaggacaaataagctactatgtcatagggtttgaataataaaaagttgaatttaatggcagacattgaatttga---------aaagagaaagagaa |
52219361 |
T |
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| Q |
248 |
gatgcttaccacatatgctgctaaaatggcgtaaacaatcatcaatgattgtatcaaaattcttaacaagaccaggtaacccatatgattttccatgtcc |
347 |
Q |
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| T |
52219362 |
gatgcataccacatatgctgctaaaatggcgtaaacaatcatcaatgattgtatcaaaattcttaacaagaccaggtaacccatatgattttccatgtcc |
52219461 |
T |
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| Q |
348 |
ttcataatctataccatatactgcatatccaccatttgcaagtcttcttgcagtgcctatatattcatt |
416 |
Q |
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| T |
52219462 |
ttcataatctataccatatactgcatatccaccatttgcaagtcttcttgcagtgcctatatattcatt |
52219530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 52219097 - 52219167
Alignment:
| Q |
16 |
cagagccacagctcctcccattgattcccctaacaaatacctcatcttcttcttattctctggcttttctg |
86 |
Q |
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| T |
52219097 |
cagagccacagctcctcccattgattcccctaacaaatacctcatcttcttcttattctctggcttttctg |
52219167 |
T |
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