View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_33 (Length: 449)

Name: NF9366_low_33
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_33
NF9366_low_33
[»] chr5 (2 HSPs)
chr5 (1-399)||(29610206-29610615)
chr5 (57-298)||(29584408-29584649)
[»] chr3 (1 HSPs)
chr3 (217-286)||(25129001-25129070)
[»] chr7 (3 HSPs)
chr7 (353-385)||(29363627-29363659)
chr7 (353-385)||(43854960-43854992)
chr7 (353-385)||(46281061-46281093)
[»] chr6 (2 HSPs)
chr6 (348-384)||(4163273-4163309)
chr6 (348-384)||(4224894-4224930)
[»] chr4 (1 HSPs)
chr4 (348-384)||(46714905-46714941)
[»] chr2 (3 HSPs)
chr2 (353-385)||(2790357-2790389)
chr2 (353-385)||(33503117-33503149)
chr2 (353-385)||(43259954-43259986)
[»] chr1 (1 HSPs)
chr1 (353-385)||(51957315-51957347)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 29610206 - 29610615
Alignment:
Q  1 ttccttttactactttcatttcttggtaatagtaacttgtctctcannnnnnnctgcttgtattttttaaccaagggagtgtatactgtgctccaccaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  29610206 ttccttttactactttcatttcttggtaatagtaacttgtctctcatttttttctgcttgtattttttaaccaagggagtgtatactgtgctccaccaaa 29610305  T
Q  101 tagtgcaactgctaagaaggaagtgtcttctgattgggctgatatggtggacgggtttcagaagctggcacttgagtcacggttaggcataccaatcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29610306 tagtgcaactgctaagaaggaagtgtcttctgattgggctgatatggtggacgggtttcagaagctggcacttgagtcacggttaggcataccaatcatt 29610405  T
Q  201 tattgtactgatgctattcatggtaacaacaacgtctatggtactactatatttcctcacaacgttggccttggagcaactaggttcgtgctgttcctct 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  29610406 tattgtactgatgctattcatggtaacaataacgtctatggtactactatatttcctcataatgttggccttggagcaactaggttcgtgctgttcctct 29610505  T
Q  301 tc-----------attttaacctttaatttgcatctttccgaatttagctatcgacaaaggcatgtttgtattggcttatttgaacttatctactacata 389  Q
    ||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29610506 tcttatcttttttattttaacctttaatttgcatctttccgaatttagctatcgacaaaggcatgtttgtattggcttatttgaacttatctactacata 29610605  T
Q  390 tctcttgtgg 399  Q
    ||||||||||    
T  29610606 tctcttgtgg 29610615  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 57 - 298
Target Start/End: Complemental strand, 29584649 - 29584408
Alignment:
Q  57 cttgtattttttaaccaagggagtgtatactgtgctccaccaaatagtgcaactgctaagaaggaagtgtcttctgattgggctgatatggtggacgggt 156  Q
    ||||| |||||||||  ||||||||| ||||||||||||||||| | ||||||| |  |||||||||| || ||||||||||||||| |||| |||||||    
T  29584649 cttgtcttttttaacttagggagtgtgtactgtgctccaccaaaaaatgcaacttcggagaaggaagtatcatctgattgggctgatttggtagacgggt 29584550  T
Q  157 ttcagaagctggcacttgagtcacggttaggcataccaatcatttattgtactgatgctattcatggtaacaacaacgtctatggtactactatatttcc 256  Q
    |||||||| |||| ||||| || |||||||||||||||||||| ||| | || |||||| |||||||||| || || ||||| ||||| || ||||||||    
T  29584549 ttcagaagttggcccttgaatcgcggttaggcataccaatcatatatgggaccgatgctgttcatggtaataataatgtctacggtacgaccatatttcc 29584450  T
Q  257 tcacaacgttggccttggagcaactaggttcgtgctgttcct 298  Q
    |||||| |||| ||| ||||| || ||||| ||| |||||||    
T  29584449 tcacaatgttgccctcggagctacaaggttggtggtgttcct 29584408  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 25129070 - 25129001
Alignment:
Q  217 ttcatggtaacaacaacgtctatggtactactatatttcctcacaacgttggccttggagcaactaggtt 286  Q
    |||||||||| || |  ||||||||| |||| |||||||||||||| |||||||||||||| ||||||||    
T  25129070 ttcatggtaataatagtgtctatggtgctaccatatttcctcacaatgttggccttggagctactaggtt 25129001  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 29363659 - 29363627
Alignment:
Q  353 tgtttgtattggcttatttgaacttatctacta 385  Q
    |||||| ||||||||||||||||||||||||||    
T  29363659 tgtttggattggcttatttgaacttatctacta 29363627  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 43854960 - 43854992
Alignment:
Q  353 tgtttgtattggcttatttgaacttatctacta 385  Q
    |||||| ||||||||||||||||||||||||||    
T  43854960 tgtttgaattggcttatttgaacttatctacta 43854992  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 46281061 - 46281093
Alignment:
Q  353 tgtttgtattggcttatttgaacttatctacta 385  Q
    |||||| ||||||||||||||||||||||||||    
T  46281061 tgtttggattggcttatttgaacttatctacta 46281093  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 4163309 - 4163273
Alignment:
Q  348 aggcatgtttgtattggcttatttgaacttatctact 384  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  4163309 aggcatgtttggattggcttatttgagcttatctact 4163273  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 4224930 - 4224894
Alignment:
Q  348 aggcatgtttgtattggcttatttgaacttatctact 384  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  4224930 aggcatgtttggattggcttatttgagcttatctact 4224894  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 46714905 - 46714941
Alignment:
Q  348 aggcatgtttgtattggcttatttgaacttatctact 384  Q
    |||| |||||| |||||||||||||||||||||||||    
T  46714905 aggcctgtttgaattggcttatttgaacttatctact 46714941  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 2790389 - 2790357
Alignment:
Q  353 tgtttgtattggcttatttgaacttatctacta 385  Q
    |||||| ||||||||||||||||||||||||||    
T  2790389 tgtttggattggcttatttgaacttatctacta 2790357  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 33503149 - 33503117
Alignment:
Q  353 tgtttgtattggcttatttgaacttatctacta 385  Q
    ||||||||||||||||||||| |||||||||||    
T  33503149 tgtttgtattggcttatttgagcttatctacta 33503117  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 43259986 - 43259954
Alignment:
Q  353 tgtttgtattggcttatttgaacttatctacta 385  Q
    |||||| ||||||||||||||||||||||||||    
T  43259986 tgtttggattggcttatttgaacttatctacta 43259954  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 51957315 - 51957347
Alignment:
Q  353 tgtttgtattggcttatttgaacttatctacta 385  Q
    |||||||||| ||||||||||||||||||||||    
T  51957315 tgtttgtattagcttatttgaacttatctacta 51957347  T

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