View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_38 (Length: 447)

Name: NF9366_low_38
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_38
NF9366_low_38
[»] chr2 (5 HSPs)
chr2 (376-443)||(10973710-10973777)
chr2 (19-65)||(10973998-10974044)
chr2 (376-437)||(2973587-2973648)
chr2 (376-443)||(14230934-14231001)
chr2 (376-430)||(17826658-17826712)
[»] chr1 (4 HSPs)
chr1 (189-278)||(47063063-47063148)
chr1 (154-219)||(47026785-47026850)
chr1 (172-224)||(47030738-47030790)
chr1 (189-233)||(47061535-47061579)
[»] chr4 (6 HSPs)
chr4 (387-443)||(27066508-27066564)
chr4 (376-443)||(54027864-54027931)
chr4 (376-442)||(12355135-12355201)
chr4 (387-443)||(27066702-27066758)
chr4 (387-443)||(27066896-27066952)
chr4 (387-443)||(27087609-27087665)
[»] chr6 (1 HSPs)
chr6 (376-443)||(30141100-30141167)
[»] chr8 (1 HSPs)
chr8 (393-443)||(10601022-10601072)
[»] chr5 (1 HSPs)
chr5 (387-443)||(5335371-5335427)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 10973777 - 10973710
Alignment:
Q  376 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10973777 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacggcttcccggtct 10973710  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 10974044 - 10973998
Alignment:
Q  19 atggagatgaggctgtgaaaagtgggaatcaaaaatatgtccggcac 65  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||    
T  10974044 atggagatgaggctgtggaaagtgggaaccaaaaatatgtccggcac 10973998  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Complemental strand, 2973648 - 2973587
Alignment:
Q  376 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcc 437  Q
    |||||||||| || ||||||| |||||||||||| |||||||| |||||||||||| |||||    
T  2973648 aagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcc 2973587  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 14230934 - 14231001
Alignment:
Q  376 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| |||||||||||  | |||||||||    
T  14230934 aagatggtctttattcgggtcgggaagacataaccgaatttggaaacatcatcacagcctcccggtct 14231001  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 17826658 - 17826712
Alignment:
Q  376 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcac 430  Q
    |||||||||| |||||| ||| |||||| ||||| ||||||||||||||||||||    
T  17826658 aagatgctctttattcgtgtcgggaagatataaccgaatttggtaacatcatcac 17826712  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 47063063 - 47063148
Alignment:
Q  189 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgttgtttctactatatatctactatccactcccaccccaaacttggca 278  Q
    ||||||| ||||||||||||||||||||||| ||||  ||||||| |||||||    |||||||| ||||||| |||||| |||||||||    
T  47063063 atgtatgaaatgtttctttgcagcgatgtgggactaccaggcgttatttctac----tatctactctccactctcacccccaacttggca 47063148  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 47026785 - 47026850
Alignment:
Q  154 tgactttgtcaaaggcacttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtgg 219  Q
    ||||| ||||||||||| |||||||| | || | |||||||| ||||||| |||||||||||||||    
T  47026785 tgactctgtcaaaggcaattatataaaacatgtccatgtatgcaatgtttgtttgcagcgatgtgg 47026850  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 47030738 - 47030790
Alignment:
Q  172 ttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtggaacta 224  Q
    |||||||||||||||||| ||||  |||||| ||||| |||||||||| ||||    
T  47030738 ttatataagatatcttcaagtatagaatgttactttggagcgatgtgggacta 47030790  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 47061535 - 47061579
Alignment:
Q  189 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgtt 233  Q
    ||||||| |||||||||||| |||||||||| |||| ||||||||    
T  47061535 atgtatgcaatgtttctttgaagcgatgtgggactaaaaggcgtt 47061579  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 27066564 - 27066508
Alignment:
Q  387 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| ||||||||||||    
T  27066564 tattcgggtcgggaagacataatggaatttggaaacatcatcacaacttcccggtct 27066508  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 54027931 - 54027864
Alignment:
Q  376 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||| ||||| | |||| ||| |||||| ||||| |||||||||||||||||||| ||||||||||||    
T  54027931 aagacgctctttgttcgagtcgggaagatataaccgaatttggtaacatcatcacaacttcccggtct 54027864  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 12355135 - 12355201
Alignment:
Q  376 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtc 442  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| || ||||||||  ||||||||||    
T  12355135 aagatggtctttattcgggtcgggaagacataacggaatttggaaatatcatcacagcttcccggtc 12355201  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 27066758 - 27066702
Alignment:
Q  387 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| |||||||    
T  27066758 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtct 27066702  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 27066952 - 27066896
Alignment:
Q  387 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| |||||||    
T  27066952 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtct 27066896  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 27087665 - 27087609
Alignment:
Q  387 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| |||||||    
T  27087665 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtct 27087609  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 30141167 - 30141100
Alignment:
Q  376 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||||| ||| |||||||||| |||||||||||| |||| ||| |||||||||||  |||||||||||    
T  30141167 aagatggtctttattcgggtcgggaagacataacggaatgtggaaacatcatcacagcttcccggtct 30141100  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 10601022 - 10601072
Alignment:
Q  393 ggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||| |||||||||||| |||||||| |||||||||||||||| |||||||    
T  10601022 ggtcgggaagacataactgaatttggcaacatcatcacgactttccggtct 10601072  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 5335427 - 5335371
Alignment:
Q  387 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 443  Q
    |||||||||| |||||||||||| |||||||| |||||||||||  |||||| ||||    
T  5335427 tattcgggtcgggaagacataactgaatttggaaacatcatcacagcttcccagtct 5335371  T

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