View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_39 (Length: 417)
Name: NF9366_low_39
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 25868701 - 25869093
Alignment:
| Q |
18 |
acatagaagatacatccaaaattcattaatttttcagaaatctgtgtttacaaacaggagaatctcctctctgatggaatgagacttctcacaaggaaag |
117 |
Q |
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| T |
25868701 |
acatagaagatacatccaaaattcattaatttttcagaaatctgtgtttacaaacaggagaatctcctctctgatggaatgagacttctcacaaagaaag |
25868800 |
T |
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| Q |
118 |
gtgagtaaagttatgtggttggaaatatcaaatgaaaactcagttatatcaacttcaacctcagtaacatattgttacc-ttttttatatgcgtcagtaa |
216 |
Q |
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| T |
25868801 |
gtgagtaaagttatgtggttggaaatatcaaatgaaaattcagttatatcaacttcaacctcagtaacatattgtcacctttttttatatgcgtcagtaa |
25868900 |
T |
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| Q |
217 |
atgttattttcaaccataatggtaacaagaaaaagatggctacatgaaagtatatttgtgttgtactgctgttgacaatctaggaaattagtgtgacnnn |
316 |
Q |
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| T |
25868901 |
atgttattttcaaccataatggtaacaagaaaaagatggctacatgaaagtatatttgtgttgtactgctgttgacaatctaggaaattagtgtgacttt |
25869000 |
T |
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| Q |
317 |
nnnngctttgactagtcacataaaactaacccacccctttttaggcctttgataaagttatgctttttgcatttcattaacataagaataatc |
409 |
Q |
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| T |
25869001 |
ttttgctttgactagtcacataaaactaacccacccctttttaggcctttgataaagttatgctttttgcatttcattaacataagaataatc |
25869093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 250
Target Start/End: Original strand, 25866767 - 25866946
Alignment:
| Q |
71 |
acaggagaatctcctctctgatggaatgagacttctcacaaggaaaggtgagtaaagttatgtggtt--ggaaatatcaaatgaaaactcagttatatca |
168 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||| || | |||||||||| |||| ||||||| || |
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| T |
25866767 |
acaggagaatctcctctccgatggaatgagacttctcacacagaaaggtgagtaaagtttggttgttgggggagtatcaaatgagaacttagttatagca |
25866866 |
T |
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| Q |
169 |
acttcaacctcagtaacatattgttaccttttttatatgcgtcagtaaatgttattttcaaccataatggtaacaagaaaaa |
250 |
Q |
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||||||| |||| ||||| ||| || ||||| ||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
25866867 |
acttcaaactcaataacacgctgtaacaagaaatatat--gtcagtaaatgttatttacaaccatcatggtaacaagaaaaa |
25866946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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