View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_42 (Length: 410)
Name: NF9366_low_42
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 392
Target Start/End: Original strand, 48710435 - 48710814
Alignment:
| Q |
12 |
tgttacaattatagatgatctcatgttgcttgggagttaatttcacagttgttcacaggggaaacttctggattagtaatttgcatgacatccatatcta |
111 |
Q |
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| T |
48710435 |
tgttacaattatagatgatctcatgttgcttgggagttaatttcacagttgttcacaggggaaacttctggattagtaatttgcatgacatccatatcta |
48710534 |
T |
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| Q |
112 |
tgttttgactaaaatctccatagaaggaaacatttgattcagttttgactaaatggactaggtggataaggtgtgcctggagagacctcaacagcaccta |
211 |
Q |
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| T |
48710535 |
tgttttgactaaaatctccatagaaggaaacatttgattcagttt-gactaaatggactaggtggataaggtgtgcctggagagacctcaacagcaccta |
48710633 |
T |
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| Q |
212 |
aatcatcatgatgataaggattattactgctttcatttatattttctgttttcttgaatgtgtgactactcatgtctctttgatcaaacatcctaaacac |
311 |
Q |
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| T |
48710634 |
aatcatcatgatgataaggattattactgctttcatttatattttctgttttcttgaatgtgtgactactcaagtctctttgatcaaacatcctaaacac |
48710733 |
T |
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| Q |
312 |
gacttcaattcgtctccatattgaattacttggattattgtttaaccaaatgtgtttgtgctgatgtagaaatgttaccac |
392 |
Q |
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| T |
48710734 |
gacttcaattcgtctccatattgaattacttggattattgtttaaccaaatgtgtttgtgctgatgtagaaatgttaccac |
48710814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 12 - 386
Target Start/End: Original strand, 48698970 - 48699340
Alignment:
| Q |
12 |
tgttacaattatagatgatctcatgttgcttgggagttaatttcacagttgttcacaggggaaacttctggattagtaatttgcatgacatccatatcta |
111 |
Q |
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| T |
48698970 |
tgttacaatcgtagatgatatcaagttgcttagaggtcaatttcacagttgttcacaggggaaacttcctgattagtaatttgtacaacatccaattccg |
48699069 |
T |
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| Q |
112 |
tgttttgactaaaatctccatagaaggaaacatttgattcagttttgactaaatggactaggtggataaggtgtgcctggagagacctcaacagcaccta |
211 |
Q |
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||||| |||||||||| |||| |||||||| |||||||||| |||||||| |||||||||| ||| || |||| ||||||||| ||||||| ||||| | |
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| T |
48699070 |
tgtttggactaaaatcgccattcaaggaaacgtttgattcag-tttgactagatggactaggcggacaatgtgtacctggagaggcctcaactgcaccga |
48699168 |
T |
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| Q |
212 |
aatcatcatgatgataaggattattactgctttcatttatattttctgttttcttgaatgtgtgactactcatgtctctttgatcaaacatcctaaacac |
311 |
Q |
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||||||||||||| |||| ||||||||||||||| | ||||| | | ||||||||||||||| | | ||||||||||||||| ||| | | || |
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| T |
48699169 |
aatcatcatgatg---aggactattactgctttcatgtttatttccactcttcttgaatgtgtgagagtttaagtctctttgatcaaatatcattaccaa |
48699265 |
T |
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| Q |
312 |
gacttcaattcgtctccatattgaattacttggattattgtttaaccaaatgtgtttgtgctgatgtagaaatgt |
386 |
Q |
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||| |||||||||||||||||||||||||||| ||||| || ||||||||||||||| |||| ||| ||||| |
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| T |
48699266 |
gacgcgaattcgtctccatattgaattacttggactattgggtagccaaatgtgtttgtgttgatataggaatgt |
48699340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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