View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_44 (Length: 409)
Name: NF9366_low_44
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 148 - 400
Target Start/End: Complemental strand, 38009345 - 38009092
Alignment:
| Q |
148 |
aaccctagcaacacaactcaaagaaattga-tcccaagatgaataaactgaaaactgttttaattctcctatataattcttatacaatgaattttaacgt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38009345 |
aaccctagcaacacaactcaaagaaattgagtaccaagatggataaactgaaaactgttttaattctcctatataattcttatacagtgaattttaacgt |
38009246 |
T |
|
| Q |
247 |
tacaatcacttaataggacataaatcagaaaaccctaaaaaattacaaattttacccaacaaacccaaaacaatcaatatatgaattttcttccctacaa |
346 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38009245 |
tacaatcacttaataggacataaagcagaaacccctaaaaaattacaaattttacccaacaaacccaaaacaatcaatatatgaattttcttccctacaa |
38009146 |
T |
|
| Q |
347 |
ttgctagtttagcaaattctttataaacaatgacacaaagtggagcagaattat |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38009145 |
ttgctagtgtagcaaattctttataaacaatgacacaaagtggagcagaattat |
38009092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 38009479 - 38009444
Alignment:
| Q |
109 |
aagtatgtagaagtgagtaagatcactttctaacaa |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38009479 |
aagtatgtagaagtgagtaagatcactttctaacaa |
38009444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 4276784 - 4276680
Alignment:
| Q |
293 |
aaattttacccaacaaacccaaaacaatcaatatatgaattttcttccctacaattgctagtttagcaaattctttataaacaatgacacaaagtggagc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4276784 |
aaattttacccaacaaacccaaaacaatcaatctatcaattttcttccctacaattgctagtgtagcaaattctttataaac-acgacacaaagtggagc |
4276686 |
T |
|
| Q |
393 |
agaatt |
398 |
Q |
| |
|
|||||| |
|
|
| T |
4276685 |
agaatt |
4276680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 4234090 - 4233986
Alignment:
| Q |
293 |
aaattttacccaacaaacccaaaacaatcaatatatgaattttcttccctacaattgctagtttagcaaattctttataaacaatgacacaaagtggagc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4234090 |
aaattttacccaacaaacccaaaacaatcaatctatcaattttctttcctacaattgctagtgtagcaaattctttataaac-acgacacaaagtggagc |
4233992 |
T |
|
| Q |
393 |
agaatt |
398 |
Q |
| |
|
|||||| |
|
|
| T |
4233991 |
agaatt |
4233986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University