View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_45 (Length: 401)

Name: NF9366_low_45
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_45
NF9366_low_45
[»] chr6 (3 HSPs)
chr6 (7-298)||(414875-415166)
chr6 (184-265)||(404717-404798)
chr6 (201-286)||(400574-400659)
[»] chr7 (2 HSPs)
chr7 (208-298)||(12217186-12217276)
chr7 (81-133)||(4017809-4017861)
[»] chr3 (1 HSPs)
chr3 (81-138)||(15864820-15864877)
[»] chr8 (1 HSPs)
chr8 (81-125)||(34863481-34863525)
[»] chr5 (1 HSPs)
chr5 (69-125)||(2703468-2703524)
[»] chr2 (1 HSPs)
chr2 (81-144)||(37986759-37986823)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 415166 - 414875
Alignment:
Q  7 agcagaacctgtgtagcaccaaccccgtttgatcgaaagtgtgtcccgagtctaacacatgtcactcacatatttgattacattcaattatatcgttttt 106  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  415166 agcataacctatgtagcaccaaccccgtttgatcgaaagtgtgtcccgagtctaacacatgtcactcacatatttgattacattcaattatatcgttttt 415067  T
Q  107 tcaaatagttatccgtgtcgacgtgtcatgtcgtgtccaaagttcttacatatgtcaagtgattcgtagattacaacaatggtttagttttttaataaca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  415066 tcaaatagttatccgtgtcgacgtgtcatgtcgtgtccaaagttcttacatatgtcaagtgattcgtagattacaacaatggtttagttttttaataaca 414967  T
Q  207 tacctgtatttaatcatttcaggaaaaatcaagacatcaccttcggagaatccatcctcctcgcgcgcctcacaaactgtaatcatcgtcta 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  414966 tacctgtatttaatcatttcaggaaaaatcaagacatcaccttcggagaatccatcctcctcgcgcgcctcacaaactgtaatcatcgtcta 414875  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 404798 - 404717
Alignment:
Q  184 aatggtttagttttttaataacatacctgtatttaatcatttcaggaaaaatcaagacatcaccttcggagaatccatcctc 265  Q
    ||||||||| |||| ||||||||||| ||||||| |||||||| || ||||||||||| || || |||||||| ||||||||    
T  404798 aatggtttacttttgtaataacatacttgtatttgatcatttctgggaaaatcaagacgtctccgtcggagaagccatcctc 404717  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 400574 - 400659
Alignment:
Q  201 ataacatacctgtatttaatcatttcaggaaaaatcaagacatcaccttcggagaatccatcctcctcgcgcgcctcacaaactgt 286  Q
    |||| |||| ||||||| |||||||| || ||||||||||| || || |||||||| |||||||| ||   || ||||||||||||    
T  400574 ataatatacttgtatttgatcatttctgggaaaatcaagacgtcgccgtcggagaagccatcctcttcaatcgtctcacaaactgt 400659  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 12217186 - 12217276
Alignment:
Q  208 acctgtatttaatcatttcaggaaaaatcaagacatcaccttcggagaatccatcctcctcgcgcgcctcacaaactgtaatcatcgtcta 298  Q
    |||||||||||| |||||| || |||||||| || ||||| || ||||||||||| ||||| | ||| ||||| || |||||  |||||||    
T  12217186 acctgtatttaaccatttccgggaaaatcaaaacgtcaccgtcagagaatccatcttcctcactcgcttcacacacagtaattttcgtcta 12217276  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 4017809 - 4017861
Alignment:
Q  81 tgattacattcaattatatcgttttttcaaatagttatccgtgtcgacgtgtc 133  Q
    |||||||| | |||||||||||||| ||||||  |||||||||||| ||||||    
T  4017809 tgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtc 4017861  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 15864877 - 15864820
Alignment:
Q  81 tgattacattcaattatatcgttttttcaaatagttatccgtgtcgacgtgtcatgtc 138  Q
    |||||||| | ||||||||| |||||||||||  |||||||||||| |||||| ||||    
T  15864877 tgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtcgtgtc 15864820  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 34863525 - 34863481
Alignment:
Q  81 tgattacattcaattatatcgttttttcaaatagttatccgtgtc 125  Q
    ||||||||||||||||  || |||||||||||| |||||||||||    
T  34863525 tgattacattcaattaagtcattttttcaaataattatccgtgtc 34863481  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 2703468 - 2703524
Alignment:
Q  69 cactcacatatttgattacattcaattatatcgttttttcaaatagttatccgtgtc 125  Q
    ||||||||||| ||||||||||||||| | || |||||||||||  ||||| |||||    
T  2703468 cactcacatatatgattacattcaattgtgtcattttttcaaatgcttatcggtgtc 2703524  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 37986823 - 37986759
Alignment:
Q  81 tgattacattcaattatatcgttttttcaaatagttatccgtgtcgacgtgtca-tgtcgtgtcc 144  Q
    |||||||| |||| |||||| |||||||||||  ||||| |||||| ||||||| ||||||||||    
T  37986823 tgattacactcaaatatatcattttttcaaattattatctgtgtcggcgtgtcagtgtcgtgtcc 37986759  T

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