View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_48 (Length: 400)
Name: NF9366_low_48
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 49707393 - 49707793
Alignment:
| Q |
1 |
accacgggtaccttccacatatcctgcagtttgtagaagctgttagact---------attagggtttgcctaaattaaaatgatcacaactaatagttc |
91 |
Q |
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| T |
49707393 |
accacgggtaccttccacatatcctgcagtttgtagaagctgttagacttgtatggatattagggtttgcctaaattaaaatgatcacaactaatagttc |
49707492 |
T |
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| Q |
92 |
acaatgttgaacactaatacatgtcatacatcagacacaccttcaatattaagtgttggtgctatacaaacatacattacatgaacatgccgagtcaact |
191 |
Q |
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| T |
49707493 |
ccaatgttgaacactaatacatgtcatacatcggacacaccttcaatattaagtgttggtgctgtacaaacatacattacatgaacatgccgagtcaact |
49707592 |
T |
|
| Q |
192 |
atgtatcaaaagaaagcattttggattgaaaatttgtaatgaagtataataacatacagcaccttcactactgtccagtgataaagagatgcaggttccc |
291 |
Q |
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| T |
49707593 |
atgtatcaaaagaaagcattttggattgaaaatttgtaatgaagtataataacatacagcaccttcactactgtccagtgataaagagatgcaggttccc |
49707692 |
T |
|
| Q |
292 |
agggaagtggacaaaacagccttctaggaacaccatttggaacgtcatcgggcattatataagatactgcagtccacaacactaccatcactggaacacc |
391 |
Q |
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| T |
49707693 |
agggaagtggacaaaacagccttctaggaacaccatttggaatgtcatcgggcattatataagatactgcagtccacaacactaccatcactggaacacc |
49707792 |
T |
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| Q |
392 |
a |
392 |
Q |
| |
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| T |
49707793 |
a |
49707793 |
T |
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Back To:
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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 2234237 - 2234158
Alignment:
| Q |
247 |
acagcaccttcactactgtccagtgataaagagatgcaggttcccagggaagtggacaaaacagccttctaggaacacca |
326 |
Q |
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|||| ||||| ||||| |||||||| || |||||| |||||||||| ||||||||||||| || |||||||||||||||| |
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| T |
2234237 |
acagtaccttaactacagtccagtggtagagagattcaggttcccaaggaagtggacaaagcaaccttctaggaacacca |
2234158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 16742952 - 16742988
Alignment:
| Q |
119 |
acatcagacacaccttcaatattaagtgttggtgcta |
155 |
Q |
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| T |
16742952 |
acatcagacacaccttcgatatgaagtgttggtgcta |
16742988 |
T |
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