View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_52 (Length: 398)
Name: NF9366_low_52
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_52 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 10753720 - 10754090
Alignment:
| Q |
18 |
gtgctcatcccataaaacatgatagtgggtgggcttgcttgtacctaggcttccatagtaactacaaaggtaaaagtcaaactcaaaggggtgagtaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10753720 |
gtgctcatcccataaaacatgatagtgggtgggcttgcttgtacctaggcttccatagtaactacaaaggtaaaagtcaaactcaaaggggtgagtaact |
10753819 |
T |
|
| Q |
118 |
tttgtgtcaacaaccgttcccggtaaaatattgccgctagaagacccatccctccaactgtctggaaaaaatcgagtttgatgtcgtttttgtgcaacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10753820 |
tttgtgtcaacaaccgttcccggtaaaatattgccgctagaagacccatccctccaactgtctggaaaaaatcgagtttgatgtcgtttttgtgcaacaa |
10753919 |
T |
|
| Q |
218 |
taagagtgatcgttgggaaataatttaatctttggaatgctctcttcaaatcaagtagctcttcattaagaaccatgtcaaactggaactcgctcacccc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10753920 |
taagagtgatcgttgggaaataatttaatctttggaatgctctcttcaaatcaagtagctcttcattaagaaccatgtcaaactggaactcgctcacccc |
10754019 |
T |
|
| Q |
318 |
atcacgaaaaacaacaattttttcaggcctgactccattcgtctggcaatagcaactaacaagctcaacac |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
10754020 |
atcacgaaaaacaacaattttttcaggcctgactccattcttctgccaatagcaactaacaagctcaacac |
10754090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 32553289 - 32553064
Alignment:
| Q |
18 |
gtgctcatcccataaaacatgatagtgggtgggcttgcttgtacctaggcttccatagtaactacaaaggtaaaagtcaaactcaaaggggtgagtaact |
117 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| || || || |
|
|
| T |
32553289 |
gtgctcatcccacaagacatgatagtgagtgggcttgcttgtacctaggcttccatagtgactacacaggtaaaagtcaaattcaaaaggatgtacgacc |
32553190 |
T |
|
| Q |
118 |
tttgtgtcaacaaccgttcccggtaaaatattgccgctagaagacccatccctccaactgtctggaaaaaatcgagtttgatgtcgtttttgtgcaacaa |
217 |
Q |
| |
|
|||||||| ||||| ||||| || || | ||| || || | || ||| ||||| || | | ||||| |||||||||||||| || ||||| || |||| |
|
|
| T |
32553189 |
tttgtgtccacaactgttccagggaacacatttccactgggagccccctcccttacaccggcaggaaacaatcgagtttgatggcgcttttgagctacaa |
32553090 |
T |
|
| Q |
218 |
taagagtgatcgttgggaaataattt |
243 |
Q |
| |
|
|||||||||| ||||| || |||||| |
|
|
| T |
32553089 |
taagagtgatagttggaaagtaattt |
32553064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University