View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_6 (Length: 592)
Name: NF9366_low_6
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_6 |
 | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0137 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 133 - 576
Target Start/End: Original strand, 3997 - 4434
Alignment:
| Q |
133 |
agaaaaaggtaatcaatgtacatgaggaatggaacaaacaaaatgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3997 |
agaaaaaggtaatcaatgtacatgaggaatggaacacacaaaatgcccaaaaacaccccaaccaaacctaaagaaagagcacctacaacactgaaaccaa |
4096 |
T |
|
| Q |
233 |
caacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4097 |
caacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgac |
4196 |
T |
|
| Q |
333 |
caaaagtctaaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctgcaa |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4197 |
--------taaaatgacatctccttcagaggaagaatacaccccgtctgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctgcat |
4288 |
T |
|
| Q |
431 |
gaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaatgctttgacgtgatgattatg |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4289 |
gaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaatgctttgacgtgatgattatt |
4388 |
T |
|
| Q |
531 |
gtatagacattttaccatgtcatcaaaagtccagagggtgatgttg |
576 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4389 |
gtatagacattttaccgtgtcatcaaaagtccagagggtgatgttg |
4434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 133 - 576
Target Start/End: Original strand, 3896332 - 3896780
Alignment:
| Q |
133 |
agaaaaaggtaatcaatgtacatgaggaatggaacaaacaaaatgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896332 |
agaaaaaggtaatcaatgtacatgaggaatggaacacacaaaatgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaa |
3896431 |
T |
|
| Q |
233 |
caacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
3896432 |
caacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaaaatggacctaatgagggtgattcttaaataatacttatatggaatgac |
3896531 |
T |
|
| Q |
333 |
caaaa-gtc--taaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctg |
427 |
Q |
| |
|
|||| | | | | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896532 |
taaaatgacattcatagcacatctccttcagaggaagaatacaccccgtccgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctg |
3896631 |
T |
|
| Q |
428 |
caagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaatgctttgacgtgatgatt |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896632 |
caagaagccaaatatagctttaacttagattatgatcaactttggataatattataaagagatcaatgattattaatcaaaatgctttgacgtgatgatt |
3896731 |
T |
|
| Q |
528 |
atggtatagacattttaccatgtcatcaaaagtccagagggtgatgttg |
576 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3896732 |
attgtatagacattttaccatgtcatcaaaagtccagaggatgatgttg |
3896780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 3889669 - 3889730
Alignment:
| Q |
13 |
ttactctatagatactgtcgtgaaagaagattgcatgagacatggaaaatatacctaaaaaa |
74 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3889669 |
ttactctatagatactatcgggaaagaagattgcaggagacatggaaaatatacctaaaaaa |
3889730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 46285347 - 46285233
Alignment:
| Q |
404 |
tcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatatta--taaagagaccaatgattatt |
501 |
Q |
| |
|
|||| |||| ||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||| ||||||| | ||||||||||||||||| |
|
|
| T |
46285347 |
tcaaggctcatctagctggtcctgc-agaatccaaatatagc-ttaactcagattatgatcaatttggagcaatattaggaagagagaccaatgattatt |
46285250 |
T |
|
| Q |
502 |
aatcaaaatgctttgac |
518 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
46285249 |
aattaaaatgctttgac |
46285233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University