View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_60 (Length: 381)

Name: NF9366_low_60
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_60
NF9366_low_60
[»] chr3 (16 HSPs)
chr3 (248-362)||(37459881-37459996)
chr3 (138-209)||(37460533-37460604)
chr3 (131-216)||(29774814-29774899)
chr3 (257-363)||(33474991-33475098)
chr3 (133-212)||(21196417-21196496)
chr3 (133-210)||(47642761-47642837)
chr3 (133-225)||(11458037-11458129)
chr3 (127-212)||(45266503-45266588)
chr3 (133-212)||(48098126-48098205)
chr3 (131-183)||(10054301-10054353)
chr3 (163-209)||(43985712-43985758)
chr3 (134-210)||(21196571-21196648)
chr3 (135-212)||(54922552-54922628)
chr3 (132-208)||(30191664-30191740)
chr3 (131-183)||(46412468-46412520)
chr3 (160-212)||(48097368-48097420)
[»] chr2 (10 HSPs)
chr2 (257-363)||(9111099-9111206)
chr2 (136-212)||(3259875-3259951)
chr2 (160-212)||(31298818-31298870)
chr2 (130-209)||(44329724-44329803)
chr2 (131-212)||(36584451-36584531)
chr2 (128-212)||(44328525-44328609)
chr2 (169-212)||(31418-31461)
chr2 (147-209)||(28757760-28757821)
chr2 (130-183)||(24409453-24409506)
chr2 (133-210)||(31297640-31297717)
[»] chr8 (6 HSPs)
chr8 (257-363)||(32245065-32245172)
chr8 (132-209)||(14112611-14112687)
chr8 (133-212)||(27641530-27641609)
chr8 (127-216)||(16583184-16583273)
chr8 (130-183)||(41362979-41363032)
chr8 (133-209)||(14113040-14113115)
[»] scaffold0915 (1 HSPs)
scaffold0915 (133-216)||(784-867)
[»] chr7 (6 HSPs)
chr7 (133-216)||(28985278-28985361)
chr7 (131-185)||(35611212-35611266)
chr7 (136-213)||(21166376-21166452)
chr7 (133-216)||(8181107-8181190)
chr7 (132-173)||(2093732-2093773)
chr7 (136-212)||(31602908-31602984)
[»] chr1 (4 HSPs)
chr1 (134-210)||(48898883-48898959)
chr1 (132-209)||(9953148-9953224)
chr1 (129-210)||(34814475-34814556)
chr1 (160-216)||(37504989-37505044)
[»] chr5 (7 HSPs)
chr5 (130-212)||(2897948-2898030)
chr5 (134-212)||(16931251-16931329)
chr5 (133-209)||(17646609-17646685)
chr5 (133-212)||(22965743-22965822)
chr5 (129-212)||(6807929-6808012)
chr5 (133-210)||(42056406-42056483)
chr5 (169-217)||(2401717-2401764)
[»] scaffold0004 (2 HSPs)
scaffold0004 (131-212)||(127202-127283)
scaffold0004 (133-210)||(130535-130612)
[»] chr4 (8 HSPs)
chr4 (131-212)||(11014298-11014379)
chr4 (131-211)||(38193362-38193442)
chr4 (160-212)||(38194539-38194591)
chr4 (133-212)||(35142840-35142919)
chr4 (133-212)||(40732433-40732512)
chr4 (136-212)||(9617212-9617288)
chr4 (132-212)||(9618397-9618477)
chr4 (131-183)||(45936604-45936656)
[»] chr6 (4 HSPs)
chr6 (133-212)||(9904621-9904700)
chr6 (130-209)||(22019616-22019695)
chr6 (133-187)||(18142474-18142528)
chr6 (128-212)||(22018417-22018501)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 362
Target Start/End: Original strand, 37459881 - 37459996
Alignment:
Q  248 tcaaagcaatatatacatccaacacccaattgctttcaactatta-gttatgtaccacccactgatccctctttctctctctcttcgatagatattggac 346  Q
    |||| |||||||| |||| |||||||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||||| ||| |||||||||     
T  37459881 tcaaggcaatatacacattcaacacccaattgctttcaactatcaagttatgtaccgcccactgatccccctttctctctctctttgatggatattggat 37459980  T
Q  347 aatcacacgagaataa 362  Q
    ||||||| ||||||||    
T  37459981 aatcacatgagaataa 37459996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 37460604 - 37460533
Alignment:
Q  138 ttgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||   |||||||||||||||    
T  37460604 ttgcttttctgacatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccagcggtagttaact 37460533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 29774899 - 29774814
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgccgttg 216  Q
    ||||||||||||||| |||||||||||||||| ||| || ||||||||||||| |||| || | ||||||||||||||| ||||||    
T  29774899 aagaaaattgcttttttgacatcaaatgtttcttaacaagacaagtaaatgacgaaataacccccagcggtagttaactaccgttg 29774814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 33474991 - 33475098
Alignment:
Q  257 tatatacatccaacacccaattgctttcaactattagttatgtaccac-ccactgatccctctttctctctctcttcgatagatattggacaatcacacg 355  Q
    |||| ||||||||||||||||| |||||||||||||||| | | |||| ||||||||||||||| |||| |||| | ||| |||||| || ||||||| |    
T  33474991 tatacacatccaacacccaattactttcaactattagttctctcccacgccactgatccctcttgctctttctcgttgatggatattagataatcacatg 33475090  T
Q  356 agaataat 363  Q
    ||||||||    
T  33475091 agaataat 33475098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 21196417 - 21196496
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||||||||||  ||| ||||||| | ||||||||||||||| ||||||  || |||||||||||||||||    
T  21196417 gaaaattgcttttctgacatagaatatttcctattgacacaagtaaatgacaaaattatccatagcggtagttaactgcc 21196496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 47642837 - 47642761
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactg 210  Q
    ||||||||||||||||||||  |||  |||||| ||||||||||||||||| ||||||| | ||||||||||||||||    
T  47642837 gaaaattgcttttctgacatagaatacttcctattaacacaagtaaatgaccaaattac-cccagcggtagttaactg 47642761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 11458129 - 11458037
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgccgttgaattaattt 225  Q
    ||||||||| ||| |||||||||| |||||||||||||||| | ||||||| ||||||| | || |||||||||||  ||| |||||| ||||    
T  11458129 gaaaattgcctttttgacatcaaaagtttcctaataacacatggaaatgacgaaattacccccaacggtagttaaccaccgctgaattcattt 11458037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 45266588 - 45266503
Alignment:
Q  127 aataaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||||||||| ||||||  ||| ||||||| | ||||||||||||||| |||| || | |||||| |||||| ||||    
T  45266588 aataaagaaaattgcttttttgacattgaatatttcctattgacacaagtaaatgaccaaatcacactcagcggaagttaagtgcc 45266503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 48098205 - 48098126
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||||||||||  |||  |||||| | ||||||||||||||| |||||||   |||| |||||||||||||    
T  48098205 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgaccaaattacctccagcagtagttaactgcc 48098126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 10054353 - 10054301
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgac 183  Q
    ||||||||||||||||||||||  |||  |||||| |||||||||||||||||    
T  10054353 aagaaaattgcttttctgacatagaatacttcctattaacacaagtaaatgac 10054301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 43985712 - 43985758
Alignment:
Q  163 ctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    |||| ||||||||||||| |||||| ||||| |||||||||||||||    
T  43985712 ctaaaaacacaagtaaattactaaaatactcccagcggtagttaact 43985758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 21196648 - 21196571
Alignment:
Q  134 aaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcaca-gcggtagttaactg 210  Q
    |||||||||||| ||||||  |||  |||||| | ||||||||||||||| ||||||| | || ||||||||||||||    
T  21196648 aaaattgcttttttgacatagaatacttcctattgacacaagtaaatgaccaaattacccccacgcggtagttaactg 21196571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 54922628 - 54922552
Alignment:
Q  135 aaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||| ||||||   ||  |||||| | |||||| |||||||||||||||| | ||||||||||||||||||    
T  54922628 aaattgcttttttgacattgtatacttcctattgacacaaataaatgactaaattac-cccagcggtagttaactgcc 54922552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 30191664 - 30191740
Alignment:
Q  132 agaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaac 208  Q
    |||||||||||||||||||||  |||  |||||| | |||||||||||||||    |||| | ||||||||||||||    
T  30191664 agaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgacgcttttacccccagcggtagttaac 30191740  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 46412468 - 46412520
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgac 183  Q
    ||||||||||||||||||||||  |||  |||||| | |||||||||||||||    
T  46412468 aagaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgac 46412520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 48097368 - 48097420
Alignment:
Q  160 ttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||| | ||||||||||||||| ||||||| | ||| ||||||||||||||    
T  48097368 ttcctattgacacaagtaaatgaccaaattaccctcaggggtagttaactgcc 48097420  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 9111099 - 9111206
Alignment:
Q  257 tatatacatccaacacccaattgctttcaactattagttatgtaccac-ccactgatccctctttctctctctcttcgatagatattggacaatcacacg 355  Q
    |||| ||||||||||||||||| |||||||||||||||| | | |||| ||||||||||||||| |||| |||| | ||| ||||||||| ||||||| |    
T  9111099 tatacacatccaacacccaattactttcaactattagttctctcccacgccactgatccctcttgctctttctcgttgatggatattggataatcacatg 9111198  T
Q  356 agaataat 363  Q
    ||||||||    
T  9111199 agaataat 9111206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 3259875 - 3259951
Alignment:
Q  136 aattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||||||||||||||  |||  || ||| | ||||||||||||||| ||||||| | ||||||||||||||||||    
T  3259875 aattgcttttctgacatagaatactttctattgacacaagtaaatgaccaaattacccccagcggtagttaactgcc 3259951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 31298870 - 31298818
Alignment:
Q  160 ttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||| | ||||||||||||||| ||||||||| ||||||||||||||||||    
T  31298870 ttcctattgacacaagtaaatgaccaaattactcccagcggtagttaactgcc 31298818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 44329803 - 44329724
Alignment:
Q  130 aaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    ||||||||||| |||| |||||| |||| ||||||| |  ||||||||||||||||||||||   ||||| |||||||||    
T  44329803 aaagaaaattgtttttttgacataaaatatttcctattggcacaagtaaatgactaaattacctccagcgctagttaact 44329724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 36584531 - 36584451
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||||| | ||||  |||  |||||| || |||||||| |||||||||||||  |||||||||||||||||||    
T  36584531 aagaaaattgctttttttacattgaatacttcctatta-cacaagtacatgactaaattacctacagcggtagttaactgcc 36584451  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 44328525 - 44328609
Alignment:
Q  128 ataaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||| |||||||  |||| ||||||  ||| ||| ||| | ||||||||||||||| ||||||| | ||||||||||||||||||    
T  44328525 ataatgaaaattaattttttgacatagaatattttctattgacacaagtaaatgaccaaattaccctcagcggtagttaactgcc 44328609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 31418 - 31461
Alignment:
Q  169 acacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||||| ||||||| | ||||||||||||||||||    
T  31418 acacaagtaaatgaccaaattacccccagcggtagttaactgcc 31461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 28757821 - 28757760
Alignment:
Q  147 tgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    |||||||||| |||||||||||||||| | ||||||| ||||||| | || ||||||||||||    
T  28757821 tgacatcaaaagtttcctaataacacatggaaatgacgaaattac-ctcaacggtagttaact 28757760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 24409453 - 24409506
Alignment:
Q  130 aaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgac 183  Q
    ||||||||||| ||||||||||||||||  ||| ||||||||||  ||||||||    
T  24409453 aaagaaaattgtttttctgacatcaaatacttcgtaataacacatataaatgac 24409506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 31297640 - 31297717
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactg 210  Q
    ||||||||||||||||||||  |||  |||||| | ||||||||||||||  |||||||   || |||||||||||||    
T  31297640 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgatcaaattacctccaacggtagttaactg 31297717  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 363
Target Start/End: Complemental strand, 32245172 - 32245065
Alignment:
Q  257 tatatacatccaacacccaattgctttcaactattagttatgtaccac-ccactgatccctctttctctctctcttcgatagatattggacaatcacacg 355  Q
    |||| |||||||||||| |||| |||||||||||||||| | | |||| ||||||||||||||| |||| |||| | ||| ||||||||| ||||||| |    
T  32245172 tatacacatccaacacctaattactttcaactattagttctctcccacgccactgatccctcttgctctttctcgttgatggatattggataatcacatg 32245073  T
Q  356 agaataat 363  Q
    ||||||||    
T  32245072 agaataat 32245065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 14112611 - 14112687
Alignment:
Q  132 agaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    |||||||||||||| |||||| ||| ||||||||| || ||||||||||||| ||||||| | |||| ||||||||||    
T  14112611 agaaaattgcttttttgacattaaaagtttcctaaaaatacaagtaaatgaccaaattac-ctcagcagtagttaact 14112687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 27641530 - 27641609
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||||||||||  |||  || ||| | ||||||||||||||  ||||||  | ||||||||||||||||||    
T  27641530 gaaaattgcttttctgacatagaatactttctattgacacaagtaaatgatcaaattatcctcagcggtagttaactgcc 27641609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 16583184 - 16583273
Alignment:
Q  127 aataaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgccgttg 216  Q
    ||||||||||||||||||| ||||||  |||  |||||| | |||||||||| | ||||||   | | ||||||||||||||| ||||||    
T  16583184 aataaagaaaattgcttttttgacatggaatacttcctattgacacaagtaatttactaaaaagcccccagcggtagttaactaccgttg 16583273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 41362979 - 41363032
Alignment:
Q  130 aaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgac 183  Q
    ||||||||||| ||||||||||| ||||  |||||| | |||||||||||||||    
T  41362979 aaagaaaattgtttttctgacataaaatacttcctattgacacaagtaaatgac 41363032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 14113115 - 14113040
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    ||||||| ||||| |||||| ||| ||||||||| ||||||| |||||||| ||||||  | || ||||||||||||    
T  14113115 gaaaattacttttttgacattaaaagtttcctaa-aacacaaataaatgaccaaattaaccccaacggtagttaact 14113040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0915 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0915
Description:

Target: scaffold0915; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 867 - 784
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgccgttg 216  Q
    ||||| |||| ||||||||||||| ||||||||| |||||||||||||||| ||||||| | || |||||||||| | ||||||    
T  867 gaaaagtgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaagtaccgttg 784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 28985361 - 28985278
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgccgttg 216  Q
    ||||| |||| ||||||||||||| ||||||||| |||||||||||||||| ||||||| | || |||||||||| | ||||||    
T  28985361 gaaaagtgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaagtaccgttg 28985278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 35611212 - 35611266
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgacta 185  Q
    |||||||||||||||||||||| | |||||||||||| ||||| | |||||||||    
T  35611212 aagaaaattgcttttctgacattagatgtttcctaatgacacatggaaatgacta 35611266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 21166376 - 21166452
Alignment:
Q  136 aattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgccg 213  Q
    ||||||||||||||| |||| |  ||||||| ||||||||||||  |||||| ||| | |||||||||||||||||||    
T  21166376 aattgcttttctgacttcaa-tacttcctaaaaacacaagtaaaatactaaaatacccccagcggtagttaactgccg 21166452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 8181107 - 8181190
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgccgttg 216  Q
    |||||||| || |||||||||| || ||||||||||||| | | ||||| || || ||| | ||||||||||||||| ||||||    
T  8181107 gaaaattgattgtctgacatcagatttttcctaataacatatgaaaatgtcttaaatacccccagcggtagttaactaccgttg 8181190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 2093732 - 2093773
Alignment:
Q  132 agaaaattgcttttctgacatcaaatgtttcctaataacaca 173  Q
    ||||| ||||||| |||||||||||| |||||||||||||||    
T  2093732 agaaagttgctttcctgacatcaaatatttcctaataacaca 2093773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 31602984 - 31602908
Alignment:
Q  136 aattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||||||| ||| ||  ||| ||| ||| | ||||||||||||||  ||||||| | ||||||||||||||||||    
T  31602984 aattgcttttttgatattgaatattttctattgacacaagtaaatgatcaaattacccccagcggtagttaactgcc 31602908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 48898883 - 48898959
Alignment:
Q  134 aaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactg 210  Q
    |||||||||||||||||||||||| |||| || | ||| ||||||||||| ||||||| | || |||||||||||||    
T  48898883 aaaattgcttttctgacatcaaatatttcatattgacaaaagtaaatgaccaaattaccctcatcggtagttaactg 48898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 9953148 - 9953224
Alignment:
Q  132 agaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    ||||| |||||||| ||||||||||  |||||||| ||||||||||||||||  |||||| | || ||||||||||||    
T  9953148 agaaagttgcttttttgacatcaaaaatttcctaaaaacacaagtaaatgac-caattacccccaacggtagttaact 9953224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 34814475 - 34814556
Alignment:
Q  129 taaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactg 210  Q
    ||||||| |||| |||| ||||||  |||  |||||| | ||||||||||||||| ||||||||| || |||||||||||||    
T  34814475 taaagaagattgtttttttgacatagaatacttcctattgacacaagtaaatgaccaaattactcccaacggtagttaactg 34814556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 37505044 - 37504989
Alignment:
Q  160 ttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgccgttg 216  Q
    |||||| | ||||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  37505044 ttcctattgacacaagtaaatgaccaaattactc-cagcggtagttaactaccgttg 37504989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 2897948 - 2898030
Alignment:
Q  130 aaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||| |||||||||| ||||||  ||| ||||||| | ||||||||||||||| |||||||   ||||||||||||||||||    
T  2897948 aaagagaattgcttttttgacattgaatatttcctattgacacaagtaaatgaccaaattacctccagcggtagttaactgcc 2898030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 16931329 - 16931251
Alignment:
Q  134 aaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||||||||| ||||||  ||| ||||||| | ||| ||||||||||| ||||||| | ||||||||||||||||||    
T  16931329 aaaattgcttttttgacatagaatatttcctattgacataagtaaatgaccaaattacccccagcggtagttaactgcc 16931251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 17646685 - 17646609
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    ||||||||||||||||||||  |||  |||||  | ||||||||||||||| ||||||| | |||||||||||||||    
T  17646685 gaaaattgcttttctgacatagaatacttcctgttgacacaagtaaatgaccaaattacccccagcggtagttaact 17646609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 22965822 - 22965743
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||| ||||||  |||  |||||| | ||||||||||||||  ||||||||| || |||||||||||||||    
T  22965822 gaaaattgcttttttgacattgaatacttcctattgacacaagtaaatgatcaaattactcccatcggtagttaactgcc 22965743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 6808012 - 6807929
Alignment:
Q  129 taaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactca-cagcggtagttaactgcc 212  Q
    ||||||||||||||||||||| ||||||  |||| || | ||||||||||||||  |||||| ||| ||||||||||||| ||||    
T  6808012 taaagaaaattgcttttctgaaatcaaaaatttcatattgacacaagtaaatgatcaaatta-tcaccagcggtagttaattgcc 6807929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 42056406 - 42056483
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactg 210  Q
    ||||||||||||| ||||||  ||| ||| ||| | | |||||||| |||||||||||| | ||||||||| ||||||    
T  42056406 gaaaattgcttttttgacattgaatattttctattgatacaagtaactgactaaattaccctcagcggtagctaactg 42056483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 2401764 - 2401717
Alignment:
Q  169 acacaagtaaatgactaaattactcacagcggtagttaactgccgttga 217  Q
    |||||| |||||||| ||||||| | |||||||||||||||||||||||    
T  2401764 acacaactaaatgaccaaattaccc-cagcggtagttaactgccgttga 2401717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 127202 - 127283
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||||||||||||||||||   |||  ||||||   ||||||||||||||| ||||||| | ||||||||||||||||||    
T  127202 aagaaaattgcttttctgacaaagaatacttcctatcgacacaagtaaatgaccaaattacccccagcggtagttaactgcc 127283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 130612 - 130535
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactg 210  Q
    ||||||||||||| ||||||  |||  |||||| | ||||||||||||||| |||||||||  |||||||||||||||    
T  130612 gaaaattgcttttttgacatagaatacttcctattgacacaagtaaatgaccaaattactcctagcggtagttaactg 130535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 11014298 - 11014379
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||||| ||||||  |||  |||||| ||||||||||||||||| ||||||  | || |||||||||||||||    
T  11014298 aagaaaattgcttttttgacatagaataattcctactaacacaagtaaatgaccaaattatccccaacggtagttaactgcc 11014379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 38193362 - 38193442
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgc 211  Q
    ||||||||| ||||||||||||  |||  |||||| | ||||||||||||||| ||| ||| | |||||||||||||||||    
T  38193362 aagaaaattacttttctgacatagaatacttcctattgacacaagtaaatgaccaaactacccccagcggtagttaactgc 38193442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 38194591 - 38194539
Alignment:
Q  160 ttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||| | ||||||||||||||| ||||||||| ||||||||||||||||||    
T  38194591 ttcctattgacacaagtaaatgaccaaattactcccagcggtagttaactgcc 38194539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 35142840 - 35142919
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||||||| || ||||||  |||| |||||| | ||||||||||||||| ||||||| |  |||||||||||||||||    
T  35142840 gaaaattgctattttgacattgaatgcttcctattgacacaagtaaatgaccaaattacccctagcggtagttaactgcc 35142919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 40732512 - 40732433
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||||| |||||||||||  |||  |||||| | ||||||||||||||  ||||||||   |||||||||||||||||    
T  40732512 gaaaattgtttttctgacatagaatacttcctattgacacaagtaaatgatcaaattacttctagcggtagttaactgcc 40732433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 9617212 - 9617288
Alignment:
Q  136 aattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||||||| ||||||| |||  |||||| | ||||||||||||||  |||||||    |||||||||||||||||    
T  9617212 aattgcttttttgacatcgaatacttcctattgacacaagtaaatgatcaaattacctctagcggtagttaactgcc 9617288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 9618477 - 9618397
Alignment:
Q  132 agaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||||| ||||||| ||||||  |||  ||||||   ||||||||||||||| ||||||||  || |||||||||||||||    
T  9618477 agaaaaatgcttttttgacattgaatacttcctatcgacacaagtaaatgaccaaattacttccaacggtagttaactgcc 9618397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 45936604 - 45936656
Alignment:
Q  131 aagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgac 183  Q
    ||||||||||||||||||||||  |||  |||||| | |||||||||||||||    
T  45936604 aagaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgac 45936656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 9904700 - 9904621
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    ||||||||||||| ||||||  |||  || ||| | ||||||||||||||| ||||||||| || |||||||||||||||    
T  9904700 gaaaattgcttttttgacattgaatactttctattgacacaagtaaatgaccaaattactcccatcggtagttaactgcc 9904621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 22019695 - 22019616
Alignment:
Q  130 aaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaact 209  Q
    ||||||||||| |||| |||||| |||| ||||||| |  ||||||||||||||||||||||   ||||| |||||||||    
T  22019695 aaagaaaattgtttttttgacataaaatatttcctattggcacaagtaaatgactaaattacctccagcgctagttaact 22019616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 18142528 - 18142474
Alignment:
Q  133 gaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaa 187  Q
    ||||||||||||||| |||||||| | |||||||||||||| | |||||||||||    
T  18142528 gaaaattgcttttctaacatcaaaagcttcctaataacacatgaaaatgactaaa 18142474  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 22018417 - 22018501
Alignment:
Q  128 ataaagaaaattgcttttctgacatcaaatgtttcctaataacacaagtaaatgactaaattactcacagcggtagttaactgcc 212  Q
    |||| |||||||  |||| ||||||  ||| ||| ||| | ||||||||||||||| ||||||| | ||||||||||||||||||    
T  22018417 ataatgaaaattaattttttgacatagaatattttctattgacacaagtaaatgaccaaattaccctcagcggtagttaactgcc 22018501  T

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