View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_62 (Length: 377)
Name: NF9366_low_62
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_62 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 119 - 263
Target Start/End: Complemental strand, 15444361 - 15444217
Alignment:
| Q |
119 |
gaacaattaggctcatgaatatttctctgaagaaccactatatcttcattctatcttctgtagcaaaagatacatttgtagaaattgaaaaacctctgca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15444361 |
gaacaattaggctcatgaatatttctctgaagaaccactatatcttcattctatcttctgtagcaaaagatacatttgtagaaattgaaaaacctctgca |
15444262 |
T |
|
| Q |
219 |
acttagatccaaacccagtgaaattatcaacaataaggaggaagt |
263 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15444261 |
actttgatccaaacccagtgaaattatcaacaataaggaggaagt |
15444217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 15444216 - 15444150
Alignment:
| Q |
305 |
ttccgctcatatattcttgcattgtgaggtggcgatgaaggtgtgagaaaaggtgttccggtggctc |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15444216 |
ttccgctcatatattcttgcattgtgaggtggcgatgaaggtgtgagaaaaggtgttccgatggctc |
15444150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 10205794 - 10205891
Alignment:
| Q |
170 |
tatcttctgtagcaaaagatacatttgtagaaattgaaaaacctctgcaacttagatccaaacccagtgaaattatcaacaataaggaggaagtgctt |
267 |
Q |
| |
|
|||| |||| |||||||||| || |||||||||||||| | |||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10205794 |
tatcatctgaagcaaaagatgcagctgtagaaattgaaagccgtctgcagcttggatccaaactcagtgaaattatcaacaataaggaggaagtgctt |
10205891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 47210002 - 47210081
Alignment:
| Q |
292 |
gtggtgaggaaacttccgctcatatattcttgcattgtgaggtggcgatgaaggtgtgagaaaaggtgttccggtggctc |
371 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||| |||||||||||| ||||||| |
|
|
| T |
47210002 |
gtggtgaggaaacttctgctcatattttcttgcattgtgaggtggtgatgaaggagtgggaaaaggtgttcatgtggctc |
47210081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 10678378 - 10678304
Alignment:
| Q |
262 |
gtgcttcgttgaattgtgatttttgtggttgtggtgaggaaacttccgctcatatattcttgcattgtgaggtgg |
336 |
Q |
| |
|
||||||| | |||||||| |||||||||| |||||||||||| ||| |||| || |||||||||||||| |||| |
|
|
| T |
10678378 |
gtgcttcttagaattgtgctttttgtggtggtggtgaggaaagttcttctcacatcttcttgcattgtgatgtgg |
10678304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 29037157 - 29037222
Alignment:
| Q |
262 |
gtgcttcgttgaattgtgatttttgtggttgtggtgaggaaacttccgctcatatattcttgcatt |
327 |
Q |
| |
|
||||||| |||||||| |||||| |||| | | |||||||| |||||||||||| |||||||||| |
|
|
| T |
29037157 |
gtgcttccttgaattgccatttttttggtagggatgaggaaagttccgctcatattttcttgcatt |
29037222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 5451492 - 5451568
Alignment:
| Q |
292 |
gtggtgaggaaacttccgctcatatattcttgcattgtgaggtggcgatgaaggtgtgagaaaaggtgttccggtgg |
368 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||||||||| ||| | | | ||||| ||||||||||| |||||| |
|
|
| T |
5451492 |
gtggtgaggaaacctcctctcatatcttcttgcattgtgaagtgatgcttagagtgtgggaaaaggtgttacggtgg |
5451568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University