View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_64 (Length: 373)
Name: NF9366_low_64
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 14329821 - 14329539
Alignment:
| Q |
4 |
aggtccgaagaatatatcacagagggcttaggttcccttgagagtctatcacccacccaaattgtaaaatttaccgtaattaagatcatgaaagtataaa |
103 |
Q |
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| T |
14329821 |
aggtccgaagaatatatcacagagggcttaggttcccttgagagtctatcacccacctaaattgtaaaatttaccggaattaagatcatgaaagtataaa |
14329722 |
T |
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| Q |
104 |
tgaacaaaaatgtaatgtaaggctcctgtcttgttggtttgtatatagaaattagaaaacatggcatagaaattggaaaacaacttgtcatagccataca |
203 |
Q |
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| T |
14329721 |
tgaacaaaaatgtaatgtaaggctcctgtcttgttggtttgtatatagaaattagaaaacatggcatagaaattggaaaacaacttgtcatagccataca |
14329622 |
T |
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| Q |
204 |
tgaataaacaaacaaactatgttaatcgtaaattctaaggttctgcaagtcacttgcgatannnnnnncttcaaggcaaaatc |
286 |
Q |
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| T |
14329621 |
tgaataaacaaacaaactatgttaatcgtaaattctaaggttctgcaagtcacttgcaatatttttttcttcaaggcaaaatc |
14329539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 34194856 - 34194703
Alignment:
| Q |
4 |
aggtccgaagaatatatcacagagggcttaggttcccttgagagtctatcacccacccaaattgtaaaatttaccgtaattaagatcatgaaagtataaa |
103 |
Q |
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||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | || || ||||||||||| ||||| |
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| T |
34194856 |
aggtctgaagtatatatcacagaaggcttaggttcccttgagagtctatcacccacctgaattggaaaatttacaggaactaggatcatgaaagcataaa |
34194757 |
T |
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| Q |
104 |
tgaacaaaaatgtaatgtaaggctcctgtcttgttggtttgtatatagaaatta |
157 |
Q |
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| T |
34194756 |
tgaacaaaaatgtaatgtacggcttccgtcttgttggtttgtatatagaaatta |
34194703 |
T |
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