View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_67 (Length: 370)
Name: NF9366_low_67
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 34549622 - 34549965
Alignment:
| Q |
11 |
cagagattataaacgagtgaggaaagagacatagttaggagggacaaaaggagatagttgtaataattcatacctcacaccaaacacacaatcatttatt |
110 |
Q |
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| T |
34549622 |
cagagattataaacgagtgaggaaagagacataggtaggagggacaaaaggagatagttgtaataattcatacctcacaccaaacactcaatcatttatt |
34549721 |
T |
|
| Q |
111 |
ctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctaaataaat-tctataaatacctggagtgtacaagattccttcgta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| | || |||||||||||| |||||||||||||| |
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| T |
34549722 |
ctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttctacataaatctct-tcaagacctggagtgtataagattccttcgta |
34549820 |
T |
|
| Q |
210 |
acaaaaggtcttcatctctgggcagtcatcaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgagg |
309 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549821 |
ccaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgagg |
34549920 |
T |
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| Q |
310 |
ctaggaagcttctctagtaatatttcctccaatattggaaattta |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549921 |
ctaggaagcttctctagtaatatttcctccaatattggaaattta |
34549965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 58 - 327
Target Start/End: Complemental strand, 34377711 - 34377442
Alignment:
| Q |
58 |
aaggagatagttgtaataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttgg |
157 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34377711 |
aaggagaaagttgtaataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttgg |
34377612 |
T |
|
| Q |
158 |
tattttctaaataaattctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcatctctgggcagtcatcaattactatcaactcaca |
257 |
Q |
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||| ||||| | |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||| ||||| |||| ||||||| |
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| T |
34377611 |
tatcttctacacaaattctataaatacctggagtgtacaagattccattgtaccaaaaggtcttcatctctggacagtcattaattagtatccactcaca |
34377512 |
T |
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| Q |
258 |
ttttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagt |
327 |
Q |
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| T |
34377511 |
tgctggcatctcaacgtagcaatggaaagagctttcactgaaacatttgaggctaggaagcttctttagt |
34377442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 80 - 322
Target Start/End: Complemental strand, 135193 - 134952
Alignment:
| Q |
80 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctaaataaattctata |
179 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||||||| |||| ||||| ||| |
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| T |
135193 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcata |
135095 |
T |
|
| Q |
180 |
aatacctggagtgtacaagattccttcgtaacaaaaggtcttcatctctgggcagtcatcaattactatcaactcacattttggcatctcaacatagcaa |
279 |
Q |
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|| || ||| ||||| |||||||||||| | |||||||||||||||||||||||||| |||||| ||| | ||||| ||||||||||| ||||||| |
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| T |
135094 |
aagacgtggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaa |
134995 |
T |
|
| Q |
280 |
gggaaatagctttcactgaaacatttgaggctaggaagcttct |
322 |
Q |
| |
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|||||| |||||| || |||||||||||||||||||||||||| |
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| T |
134994 |
gggaaagagctttgaccgaaacatttgaggctaggaagcttct |
134952 |
T |
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