View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_7 (Length: 572)
Name: NF9366_low_7
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 46459880 - 46459324
Alignment:
| Q |
1 |
cgccgatgttgacccagaaatcgccgttgacttcatcattgaaattaatcctaagatgattggattgttgcagctttcggagagaatttctccggcgagg |
100 |
Q |
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| T |
46459880 |
cgccgatgttgacccagaaatcgccgttgacttcatcattgaaattaatcctaagatgattggattgttgcagctttcggagagaatttctccggcgagg |
46459781 |
T |
|
| Q |
101 |
gtagaataaacagaaacaggtgagtttctaggttttgtgaaatcggaatagagattccgattgcgaaagccgccggaacgttcgagatcgggattctggt |
200 |
Q |
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| T |
46459780 |
gtagaataaacagaaacaggtgagtttctaggttttgtgaaatcggaatagagattccgattgcgaaagccgccggaacgttcgagatcgggtttcgggt |
46459681 |
T |
|
| Q |
201 |
tggatccaaagaggcgcgaaaggatgcaacactcttggacgcagcgagaattcgcgactcgaacgccggcggaggaaactaagttttgggcaacatagcc |
300 |
Q |
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| T |
46459680 |
tggatccaaagaggcgcgaaaggatgcaacactcttggacacaacgagaattcgcgactcgaacgccggcggaggaaactaagttttgggcaacatagcc |
46459581 |
T |
|
| Q |
301 |
ggaaaaggagaaggtaactcggatagccataacgaagaattggattaggttgattaagaaaaggtacagtgtggtttcggagtgaaagatttgggaaggg |
400 |
Q |
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| T |
46459580 |
ggaaaaggagaaggtaactcggatagccataacgaagaattggattaggttgattaagaaaaggtacagtgtggtttcggagtgaaagatttgggaaggg |
46459481 |
T |
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| Q |
401 |
tgaaaccctagcaagtgagataagccattttgtgagaagaattcgttgaacgggtcaaggtagggttgaattgaagggtagttagggaatcagggaaggg |
500 |
Q |
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| T |
46459480 |
tgaaaccctagcaagtgagataagccattttgtgagaagaattcgttgaacggatcaaggtagggttgaattgaagggtagttagggaatcagggaagag |
46459381 |
T |
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| Q |
501 |
aagcgccgccgccggcgatgtaactcctccgattaccggaggatgatagagaaagct |
557 |
Q |
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| T |
46459380 |
aagcgccgccggcggtgatgtaactcctccggtaatcggaggaggatagagaaagct |
46459324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 12045049 - 12044831
Alignment:
| Q |
1 |
cgccgatgttgacccagaaatcgccgttgacttcatcattgaaattaatcctaagatgattggattgttgcagctttcggagagaatttctccggcgagg |
100 |
Q |
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| T |
12045049 |
cgccgatgttgacccagaaatcgccgttgagttcatcattgaaattaatcctaagatgattggattgttgcagctttcggagagaatttctccggcgagg |
12044950 |
T |
|
| Q |
101 |
gtagaataaacagaaacaggtgagtttctaggttttgtgaaatcggaatagagattccgattgcgaaagccgccggaacgttcgagatcgggattctggt |
200 |
Q |
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| T |
12044949 |
gtagaataaacagaaacaggtgagtttctaggttttgtgaaatcggaatagagattccggttgcgaaagccgccggaacgttcgagatcgggtttctggt |
12044850 |
T |
|
| Q |
201 |
tggatccaaagaggcgcga |
219 |
Q |
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| T |
12044849 |
tggatccaaagaggcgcga |
12044831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 317 - 493
Target Start/End: Complemental strand, 12044831 - 12044655
Alignment:
| Q |
317 |
actcggatagccataacgaagaattggattaggttgattaagaaaaggtacagtgtggtttcggagtgaaagatttgggaagggtgaaaccctagcaagt |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12044831 |
actctgatagccataacgaagaattggattaggttgattaagaaaaggtacagtgtggtttcggagtgaaagatttgggaagggtgaaaccctagcaagt |
12044732 |
T |
|
| Q |
417 |
gagataagccattttgtgagaagaattcgttgaacgggtcaaggtagggttgaattgaagggtagttagggaatcag |
493 |
Q |
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| T |
12044731 |
gagataagccattttgtgagaagaattcgttgaacggatcaaggtagggttgaattgaagggtagttagggaatcag |
12044655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 175 - 333
Target Start/End: Complemental strand, 24452316 - 24452158
Alignment:
| Q |
175 |
ggaacgttcgagatcgggattctggttggatccaaagaggcgcgaaaggatgcaacactcttggacgcagcgagaattcgcgactcgaacgccggcggag |
274 |
Q |
| |
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|||||| || |||||||| || |||||||||||||||| || || ||||| || || || ||||| | ||||| ||| ||||||||||||| ||| ||| |
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| T |
24452316 |
ggaacgatccagatcgggtttttggttggatccaaagaaacgagagaggatacagcattcatggacaccgcgaggatttgcgactcgaacgctggccgag |
24452217 |
T |
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| Q |
275 |
gaaactaagttttgggcaacatagccggaaaaggagaaggtaactcggatagccataac |
333 |
Q |
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||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
24452216 |
gaaactagggtttgggcgacatagccggaaaaggagaaggtggctcggatagccataac |
24452158 |
T |
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