View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_71 (Length: 366)
Name: NF9366_low_71
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_71 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 366
Target Start/End: Original strand, 49707031 - 49707382
Alignment:
| Q |
15 |
aaatatatcgatgcttacctgcctcctaagaactgccaaactttttgtatgcatgggagactgtggaaggactccatttgaaggaggaaggccaaggagg |
114 |
Q |
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| T |
49707031 |
aaatatatcgatgcttacctgcctcctaagaactgccaaactctttgtatgcatgggagactgtggaaggactccatttgaaggaggaaggccaaggagg |
49707130 |
T |
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| Q |
115 |
ccacaaatcagagtctaaagactcaccatagagataattatgtcaataaactttatcatcaacgtagaataacataaatccaaattctaggaagaaaaca |
214 |
Q |
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| T |
49707131 |
ccacaaatcagagtctaaagactcaccatagagataattatgtcaataaactttatcatcaacgtagaataacataaatccaaattctaggaagaaaaca |
49707230 |
T |
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| Q |
215 |
aaataacacaccattattccaagtaggaaaacatcataatggtaggcagatggcttttgaaggttgaattctttctgttgtgccatctgagaggccacgc |
314 |
Q |
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| T |
49707231 |
aaataacacaccattattccaagtaggaaaacatcataatggtaggcagatggcttttgaaggttgaattctttctgttgtgccatctgagaggccacgc |
49707330 |
T |
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| Q |
315 |
tatgatcgaaaaagtataaacctgctatcatcaaagctggaataattgcccc |
366 |
Q |
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| T |
49707331 |
tatgatcgaaaaagtataaacctgctatcatcaaagctggaataattgcccc |
49707382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 366
Target Start/End: Complemental strand, 2234483 - 2234341
Alignment:
| Q |
224 |
accattattccaagtaggaaaacatcataatggtaggcagatggcttttgaaggttgaattctttctgttgtgccatctgagaggccacgctatgatcga |
323 |
Q |
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| T |
2234483 |
accattattccaagaagaaaaacatcatagtggtaagcagatggtttttgaaggttgaattccttctgttgagccatcttggaagctacactatgatcaa |
2234384 |
T |
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| Q |
324 |
aaaagtataaacctgctatcatcaaagctggaataattgcccc |
366 |
Q |
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| T |
2234383 |
aaaagtataaacctgctatcataactgctggaataaatgcccc |
2234341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 2234664 - 2234559
Alignment:
| Q |
30 |
tacctgcctcctaagaactgccaaactttttgtatgcatgggagactgtggaaggactccatttgaaggaggaaggccaaggaggccacaaatcagagtc |
129 |
Q |
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| T |
2234664 |
tacctgccttctaagagtcgctaaactcttagtatgcataggggactgaggaaggactccatttactggagggagaccaagaatgccgcaaataagagtc |
2234565 |
T |
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| Q |
130 |
taaaga |
135 |
Q |
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|||||| |
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| T |
2234564 |
taaaga |
2234559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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