View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_75 (Length: 362)
Name: NF9366_low_75
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 26 - 345
Target Start/End: Complemental strand, 32346580 - 32346256
Alignment:
| Q |
26 |
ggtatcctgtgaaaactaaaatatgttgtttgtggttctgttttcaaacatcaaagagggtaaaactgagttctagggagagagaaaaagagtgaataag |
125 |
Q |
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| T |
32346580 |
ggtatccggtgaaaactaaaatatgttgtttgtggttctgttttcaaacatcaaagagggtaaaactgagttttagggagagaaaaaaagagtgaataag |
32346481 |
T |
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| Q |
126 |
caatttgatcctaaaacgtgtaagttt----atcaacaggttcatccataaaattatagtgtttttgtcaaaacaattcatttattagcgtcttttgttc |
221 |
Q |
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| T |
32346480 |
caatttgatcctaaaacgtgtaagcttcggaatcaacagattcatccataaaattatagtgtttttgtcaaaacaattcatttattaacgtcttttgttc |
32346381 |
T |
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| Q |
222 |
cactccggctcaacatgttaaatgaacgattgtcatttcatgtttatatcacatcattgtcacatcttcaaagaaatga-tgtcaannnnnnnnaaggga |
320 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
32346380 |
cactgtggctcaacatgttaaatgaacgattgtcatttcatgtttatatcacatcattgtcacatcttcaaagaaatgattgtcaattttttttaaggga |
32346281 |
T |
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| Q |
321 |
aatactaactggtgctcccgagtca |
345 |
Q |
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|||||||| ||||| |||| ||||| |
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| T |
32346280 |
aatactaattggtgttcccaagtca |
32346256 |
T |
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