View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_77 (Length: 355)

Name: NF9366_low_77
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_77
NF9366_low_77
[»] chr6 (4 HSPs)
chr6 (1-336)||(34898434-34898769)
chr6 (1-79)||(1485158-1485235)
chr6 (1-79)||(30926790-30926868)
chr6 (7-39)||(2234550-2234582)
[»] chr3 (3 HSPs)
chr3 (1-70)||(30301010-30301079)
chr3 (1-39)||(46853546-46853584)
chr3 (1-39)||(35264423-35264461)
[»] chr4 (2 HSPs)
chr4 (1-39)||(33844012-33844050)
chr4 (3-39)||(4243422-4243458)
[»] chr2 (1 HSPs)
chr2 (1-39)||(44439289-44439327)
[»] chr1 (2 HSPs)
chr1 (1-35)||(28287348-28287382)
chr1 (1-37)||(20026176-20026212)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 34898769 - 34898434
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattctcaccacttatttgctaactta 100  Q
    |||||||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34898769 ttgaacaataaattcgagtgttaaaatcaattctagaataaaaaaactctaatttctagcttcaagtagaatcgattctcaccacttatttgctaattta 34898670  T
Q  101 ctgtttcttcgtctaggtgatctctggtcaggttccgaagggggtgttattaagatttggccttgggaatcaattgaaaaatctctctctatgtctccag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898669 ctgtttcttcgtctaggtgatctctggtcaggttccgaagggggtgttattaagatttggccttgggaatcaattgaaaaatctctctctatgtctccag 34898570  T
Q  201 aagaaaagcacatggcagccttacttgtggagagatcattcattgatctcagaactcaagtcactgtcaatggtgtctgcagtatatcttctcaagaggt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34898569 aagaaaagcacatggcagccttacttgtggagagatcattcattgatctcagaactcaagtcaccgtcaatggtgtctgcagtatatcttctcaagaggt 34898470  T
Q  301 taagtgttttctgtctgatcatattagagctcgtgt 336  Q
    ||||||||||||||||||||||||||||| ||||||    
T  34898469 taagtgttttctgtctgatcatattagaggtcgtgt 34898434  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1485158 - 1485235
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 79  Q
    |||||||||||||| ||||||||||||||||||||||||       ||||||||||||| ||||||||||||| |||||    
T  1485158 ttgaacaataaatttgagtgttaaaatcaattctagaat-caaaagctccaatttctagattcaagtagaatcaattct 1485235  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 30926790 - 30926868
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaag-tagaatcgattct 79  Q
    |||||||||||||| |||||| |||||||||||||||||       |||||||||||||||||||| ||||||| |||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaat-aaaaaactccaatttctagcttcaagttagaatccattct 30926868  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 2234582 - 2234550
Alignment:
Q  7 aataaattcgagtgttaaaatcaattctagaat 39  Q
    |||||||| ||||||||||||||||||||||||    
T  2234582 aataaatttgagtgttaaaatcaattctagaat 2234550  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30301010 - 30301079
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 70  Q
    |||||||||||||| ||||||||||| ||||||||||||       ||||||||||||||||||| ||||    
T  30301010 ttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaataga 30301079  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 46853546 - 46853584
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctagaat 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  46853546 ttgaacaataaatttgagtgttaaaatcaattctagaat 46853584  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35264423 - 35264461
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctagaat 39  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  35264423 ttgaacaataaatttaagtgttaaaatcaattctagaat 35264461  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33844050 - 33844012
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctagaat 39  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  33844050 ttgaacaataaatttgagtgttaaaatcaattttagaat 33844012  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 4243458 - 4243422
Alignment:
Q  3 gaacaataaattcgagtgttaaaatcaattctagaat 39  Q
    |||||||||||| |||||| |||||||||||||||||    
T  4243458 gaacaataaatttgagtgtaaaaatcaattctagaat 4243422  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44439327 - 44439289
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctagaat 39  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  44439327 ttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28287348 - 28287382
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattcta 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  28287348 ttgaacaataaatttgagtgttaaaatcaattcta 28287382  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20026176 - 20026212
Alignment:
Q  1 ttgaacaataaattcgagtgttaaaatcaattctaga 37  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  20026176 ttgaacaataaatttgagtgttcaaatcaattctaga 20026212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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