View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_79 (Length: 352)

Name: NF9366_low_79
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_79
NF9366_low_79
[»] chr6 (1 HSPs)
chr6 (71-350)||(4915610-4915889)
[»] chr8 (8 HSPs)
chr8 (71-349)||(2930942-2931220)
chr8 (71-350)||(3011547-3011829)
chr8 (90-333)||(2947605-2947854)
chr8 (87-330)||(37796462-37796705)
chr8 (143-235)||(2921708-2921800)
chr8 (18-71)||(6540816-6540870)
chr8 (18-70)||(13255424-13255477)
chr8 (18-70)||(45036401-45036454)
[»] chr3 (4 HSPs)
chr3 (71-348)||(1505862-1506139)
chr3 (18-70)||(41968425-41968478)
chr3 (18-70)||(39983981-39984034)
chr3 (18-70)||(39985042-39985095)
[»] chr2 (9 HSPs)
chr2 (156-329)||(28025461-28025634)
chr2 (18-70)||(4517481-4517534)
chr2 (18-70)||(14685476-14685529)
chr2 (18-70)||(21306271-21306324)
chr2 (18-70)||(30246317-30246370)
chr2 (18-70)||(40421239-40421292)
chr2 (18-70)||(40422300-40422353)
chr2 (18-71)||(14684414-14684468)
chr2 (18-70)||(21307328-21307381)
[»] chr4 (2 HSPs)
chr4 (18-70)||(54938007-54938060)
chr4 (18-70)||(54939067-54939120)
[»] chr1 (4 HSPs)
chr1 (18-70)||(27962855-27962908)
chr1 (18-70)||(173098-173151)
chr1 (18-70)||(8090279-8090332)
chr1 (18-70)||(48907539-48907592)
[»] chr7 (2 HSPs)
chr7 (18-70)||(13077389-13077442)
chr7 (18-70)||(13078450-13078503)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 71 - 350
Target Start/End: Original strand, 4915610 - 4915889
Alignment:
Q  71 gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915610 gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat 4915709  T
Q  171 gcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgct 270  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4915710 gcttaactccatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgtt 4915809  T
Q  271 aggtatccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattagtgatgtccatctcattgatca 350  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||    
T  4915810 aggtctccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattagtgatatacctttcattgatca 4915889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 71 - 349
Target Start/End: Complemental strand, 2931220 - 2930942
Alignment:
Q  71 gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat 170  Q
    |||| |||||| ||| ||||||||||||||| || ||||| ||||| ||||||| |||||| |||||| |||| ||||| | ||||||||||||||||||    
T  2931220 gagttatgttcaattgtgaggaagcatgtgaatttattggaaaagaactaatgtctcgtgctgcttctttctcattaagtaggagtcatgttcttttgat 2931121  T
Q  171 gcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgct 270  Q
     ||||||||| |||||||| || ||| ||  ||||||||||| ||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||  |    
T  2931120 tcttaacttcgtccaatatatccggacaaaccttcttcctttggacaattttgttgacagcatcaaagaggcaagttggctaaagacatcttgtggtctt 2931021  T
Q  271 aggtatccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattagtgatgtccatctcattgatc 349  Q
    |||  ||| || ||||| ||||||||||  |||| |||||||||||||||||| ||||||||| ||| | |||||||||    
T  2931020 aggcctcctgtgggatcggtattgaatgactcaggatggcaagttgcatcacaaattagtgatatccctttcattgatc 2930942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 71 - 350
Target Start/End: Original strand, 3011547 - 3011829
Alignment:
Q  71 gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat 170  Q
    ||||||||||| ||| ||||||||||||||  |||||||| | |||||| |||| |||||| |||||  ||||  |||| | |||| |||||||||||||    
T  3011547 gagtgatgttcaattgtgaggaagcatgtggattcattggaagagagctcatgtctcgtgcagcttcattctcactaagcaggagtgatgttcttttgat 3011646  T
Q  171 gcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgct 270  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||| ||| | | |||||| ||||||||||||||||| ||||  |    
T  3011647 gcttaacttcatccaatatctcaagaaaagtcttcttcctttggacaattttgtcgacagcataagaaagggaaattggctaaagacatcttttggtctt 3011746  T
Q  271 aggtatccagttggatctgtattgaatggttcagaatggcaagttg---catcacagattagtgatgtccatctcattgatca 350  Q
    |||| ||| || ||||| |||||||||| ||| | |||||||||||   ||||||| ||||||||| | | | ||||||||||    
T  3011747 aggtctcctgtgggatcggtattgaatgattccggatggcaagttgtatcatcacaaattagtgatattcctttcattgatca 3011829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 90 - 333
Target Start/End: Complemental strand, 2947854 - 2947605
Alignment:
Q  90 ggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgatgcttaacttcatccaatat 189  Q
    ||||| |||| | |||||||| | ||||||||||| ||||||||||||| |||||||||  | ||  |||||||||| ||||||||||||||||||||||    
T  2947854 ggaagtatgttatttcattggaagagagctaatgtctcgtgcggcttctttctctttaaccaggaaccatgttctttggatgcttaacttcatccaatat 2947755  T
Q  190 ctcaggaaaagtc------ttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgctaggtatccagttg 283  Q
    |||  ||||||||      |||||  ||| |||  |||||| |||  | ||||| ||||||||||||||||||||||   ||||  ||||| ||| || |    
T  2947754 ctccagaaaagtcgtctttttctttgtttagacttatttgtcgacttcctcaaacagggaagttggctaaagacatcacatggttttaggtctcctgtgg 2947655  T
Q  284 gatctgtattgaatggttcagaatggcaagttgcatcacagattagtgat 333  Q
    ||||||||||||||| ||| | |||||||||||||||||| |||||||||    
T  2947654 gatctgtattgaatgattccggatggcaagttgcatcacaaattagtgat 2947605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 330
Target Start/End: Complemental strand, 37796705 - 37796462
Alignment:
Q  87 tgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgatgcttaacttcatccaa 186  Q
    ||||||||||||| | |||||||| | ||| || |||| ||| ||  ||||  || ||||||| |||| |||||| |||||||||||||| |||||||||    
T  37796705 tgaggaagcatgtaaattcattggaagagaactgatgtctcgcgcatcttccttcactttaagtaagaatcatgtccttttgatgcttaaattcatccaa 37796606  T
Q  187 tatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgctaggtatccagttggat 286  Q
    |||||||||| ||||||||| || || |||||||||||| ||| ||||| ||| | |  ||||||||||||||||   |||  ||||| ||| |||||||    
T  37796605 tatctcaggagaagtcttctcccattggacaaatttgtgaacagcatcagagatgaaccttggctaaagacatctgaaggtcttaggtctcctgttggat 37796506  T
Q  287 ctgtattgaatggttcagaatggcaagttgcatcacagattagt 330  Q
    |||| ||||||| ||| | |||| |||| |||||||| ||||||    
T  37796505 ctgttttgaatgattccggatggaaagtagcatcacaaattagt 37796462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 2921800 - 2921708
Alignment:
Q  143 ctttaagaaagagtcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatca 235  Q
    ||||||| |||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||| |||||    
T  2921800 ctttaagcaagaatcatgttattttaatgcttaacttcatccaatatctcagtaaaagtcttcttcctctggacaaatttgtgaacagcatca 2921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 6540816 - 6540870
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaacag 71  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  6540816 attaactactataattataataaaactgacacaattctaataagatatctaacag 6540870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13255477 - 13255424
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  13255477 attaactactataattataataaaactgacacaattctaataagatatctaaca 13255424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 45036401 - 45036454
Alignment:
Q  18 attaactactattattataataaaactgacaca-atctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||  |||||||||||||| ||||    
T  45036401 attaactactataattataataaaactgacacagttctaataagatatccaaca 45036454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 71 - 348
Target Start/End: Original strand, 1505862 - 1506139
Alignment:
Q  71 gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat 170  Q
    |||| ||||||  |||||||||||||||||| |||||||  | ||| ||||||| |||||| |||||| |||||||||||   |||||||||||||||||    
T  1505862 gagttatgttcagttatgaggaagcatgtgacttcattgcaagagaactaatgtctcgtgctgcttctttctctttaagaggaagtcatgttcttttgat 1505961  T
Q  171 gcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgct 270  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||  ||  ||| | | ||| |||||||||||||||||||||||||  |    
T  1505962 gcttaacttcatccaatatcttaggaaaagccttcttcctttggacaactttgtcaactgcataagaaaggaaagttggctaaagacatcttgtggtctt 1506061  T
Q  271 aggtatccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattagtgatgtccatctcattgat 348  Q
    |||| ||| || ||||||||| |||||| |||    |||||||||||||||||||||||| || ||| | ||||||||    
T  1506062 aggtctcctgtgggatctgtactgaatgattctagctggcaagttgcatcacagattagtaatatccctatcattgat 1506139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 41968425 - 41968478
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  41968425 attaactactataattataataaaactgacacaattctaataagatatctaaca 41968478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 39983981 - 39984034
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  39983981 attaactactataattataataaaactgacacaattctaataagatatccaaca 39984034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 39985042 - 39985095
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  39985042 attaactactataattataataaaactgacacaattctaataagatatccaaca 39985095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 329
Target Start/End: Complemental strand, 28025634 - 28025461
Alignment:
Q  156 tcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaag 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| ||| ||||| ||| |||  ||||||||||    
T  28025634 tcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttctcccgttggacaaatttgtgaacagcatcagagatggaccttggctaaag 28025535  T
Q  256 acatcttgtggtgctaggtatccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattag 329  Q
    |||||||  |||   |||| ||| || ||||| |||||| ||| ||| | ||||||||| ||||| ||||||||    
T  28025534 acatctttgggtctaaggtctcctgtgggatcagtattgcatgattccggatggcaagtcgcatctcagattag 28025461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 4517481 - 4517534
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  4517481 attaactactataattataataaaactgacacaattctaataagatatccaaca 4517534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 14685529 - 14685476
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  14685529 attaactactataattataataaaactgacacaattctaataagatatccaaca 14685476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 21306324 - 21306271
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  21306324 attaactactataattataataaaactgacacaattctaataagatatccaaca 21306271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 30246370 - 30246317
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  30246370 attaactactataattataataaaactgacacaattctaataagatatccaaca 30246317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 40421292 - 40421239
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  40421292 attaactactataattataataaaactgacacaattctaataagatatccaaca 40421239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 40422353 - 40422300
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  40422353 attaactactataattataataaaactgacacaattctaataagatatccaaca 40422300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 14684468 - 14684414
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaacag 71  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||||| |||||    
T  14684468 attaactactataattataattaaactgacacaattctaataagatatccaacag 14684414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 21307381 - 21307328
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||||| ||||    
T  21307381 attaactactataattataatgaaactgacacaattctaataagatatccaaca 21307328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 54938007 - 54938060
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  54938007 attaactactataattataataaaactgacacaattctaataagatatctaaca 54938060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 54939067 - 54939120
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  54939067 attaactactataattataataaaactgacacaattctaataagatatctaaca 54939120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 27962855 - 27962908
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  27962855 attaactactataattataataaaactgacacaattctaataagatatctaaca 27962908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 173098 - 173151
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  173098 attaactactataattttaataaaactgacacaattctaataagatatctaaca 173151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 8090279 - 8090332
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  8090279 attaactactataattataataaaactgacacaattctaataagatatccaaca 8090332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 48907539 - 48907592
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  48907539 attaactactataattataataaaactgacacaattctaataagatatccaaca 48907592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13077442 - 13077389
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  13077442 attaactactataattataataaaactgacacaattctaataagatatccaaca 13077389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13078503 - 13078450
Alignment:
Q  18 attaactactattattataataaaactgacacaa-tctaataagatatctaaca 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  13078503 attaactactataattataataaaactgacacaattctaataagatatccaaca 13078450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University