View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_81 (Length: 347)
Name: NF9366_low_81
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 10238975 - 10238644
Alignment:
| Q |
1 |
taatattatgcatttgataaacgcatgggatgaggaagatgggaaaacagtgacaatagttgcaccgaatattctctgcgtggagcatatgatggagaga |
100 |
Q |
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| T |
10238975 |
taatattatgcatttgataaacgcatgggatgaggaagatgggaaaacagtgacaatagttgcaccgaatattctctgcgtggagcatatgatggagaga |
10238876 |
T |
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| Q |
101 |
ttggagcttattcatgaaatgattgagaaagtgagaattaacgtcgaaacggggatagtaacaagacaaccgttatcagcaagaaatcttgatttggcag |
200 |
Q |
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| T |
10238875 |
ttggagcttattcatgaaatgattgagaaagtgagaattaacgtcgaaacggggatagtaacaagacaaccgttatcagcaagaaatcttgatttggcag |
10238776 |
T |
|
| Q |
201 |
tgataaacaatgagtttttggggaagaaacacaggtttatttacgcggcgattgggaatccaatgccgaagttttcgggggtggtgaagattgatgtgtt |
300 |
Q |
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| T |
10238775 |
tgataaacaatgagtttttggggaagaaacacaggtttatttacgcggcgattgggaatccaatgccgaagttttcgggggtggtgaagatagatgtgtt |
10238676 |
T |
|
| Q |
301 |
gaaaggggaggaaattgggtgtaggttgtatg |
332 |
Q |
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| T |
10238675 |
gaaaggggaggaagttgggtgtaggttgtatg |
10238644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 10230195 - 10229864
Alignment:
| Q |
1 |
taatattatgcatttgataaacgcatgggatgaggaagatgggaaaacagtgacaatagttgcaccgaatattctctgcgtggagcatatgatggagaga |
100 |
Q |
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| T |
10230195 |
taatattatgcatacgataaacgcatgggatgaggaagatgggggaacagtgacattggtagcaacgaatattttgtcagtgcagcatgtgatggagaga |
10230096 |
T |
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| Q |
101 |
ttggagcttattcatgaaatgattgagaaagtgagaattaacgtcgaaacggggatagtaacaagacaaccgttatcagcaagaaatcttgatttggcag |
200 |
Q |
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| T |
10230095 |
atggaccttattcatgccatgattgagaaagtgaggattaatgtcgaaacggggttagtaacaagacaaccattatcagcaagaaatcttgatttggcag |
10229996 |
T |
|
| Q |
201 |
tgataaacaatgagtttttggggaagaaacacaggtttatttacgcggcgattgggaatccaatgccgaagttttcgggggtggtgaagattgatgtgtt |
300 |
Q |
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| T |
10229995 |
tgataaacaatgattttttggggaagaagagtaggtttgtttatgcagcgattgggaatccaatgccaaagttttcgggggtggtgaagattgatgtgtt |
10229896 |
T |
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| Q |
301 |
gaaaggggaggaaattgggtgtaggttgtatg |
332 |
Q |
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| T |
10229895 |
gaaaggggaggaagttggatgtaggttgtatg |
10229864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 10255630 - 10255964
Alignment:
| Q |
1 |
taatattatgcatttgataaacgcatgggatgaggaagatgg---gaaaacagtgacaatagttgcaccgaatattctctgcgtggagcatatgatggag |
97 |
Q |
| |
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|||||||||||| ||||||| ||||||||| |||||||| | |||| |||||| || |||| || ||| |||||| | | ||||||| ||||||| |
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| T |
10255630 |
taatattatgcacgcgataaactcatgggatggggaagatgatgaggaaactgtgacactaattgctccaaatgttctctccattgagcatacgatggag |
10255729 |
T |
|
| Q |
98 |
agattggagcttattcatgaaatgattgagaaagtgagaattaacgtcgaaacggggatagtaacaagacaaccgttatcagcaagaaatcttgatttgg |
197 |
Q |
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| T |
10255730 |
agacttgagctagttcatgcaatgattgagaaggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgcgaaacctggatttcg |
10255829 |
T |
|
| Q |
198 |
cagtgataaacaatgagtttttggggaagaaacacaggtttatttacgcggcgattgggaatccaatgccgaagttttcgggggtggtgaagattgatgt |
297 |
Q |
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| T |
10255830 |
cggtgataaatggtgattatatggggaagaagaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggggtggtgaagatagatgt |
10255929 |
T |
|
| Q |
298 |
gttgaaaggggaggaaattgggtgtaggttgtatg |
332 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
10255930 |
gttgaaaggggaggaagttgggtgtaggttgtatg |
10255964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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