View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_83 (Length: 344)
Name: NF9366_low_83
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 4859555 - 4859234
Alignment:
| Q |
14 |
cagaaaagacctcaaactatgttgacatctcaaattcatcagcaagcatctgcagcacctcaataagtttattaacataaaataaaaataaggacataaa |
113 |
Q |
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| T |
4859555 |
cagaaaagacctcaaactatgttgacatctcaaattcatcagcaagcatctgcagcacctcaataagtttattaacataaaataaaaataaggacataaa |
4859456 |
T |
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| Q |
114 |
cttcgggtgactaggccaagaaaacagatagcgcaaaactttaatctcgtttaaaaccatactaaaaaacacaattggataaaactattttgaatagaaa |
213 |
Q |
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| T |
4859455 |
cttcgggtgactatgccaagaaaacagatagcgcaaaactttaatctcgttaaaaaccatactaaaaaacacaattggataaaactattttgaatagaaa |
4859356 |
T |
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| Q |
214 |
aataaagtgcaaagcaatgaaccaaactatactaacattttttgctgatcaaagagtagtttttgtagatcgggaggagaggaatgcgtatgtgttcttg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4859355 |
aataaagtgcaaagcaatgaaccaaactatactaacattttttgctgatcaaagagtagtttttgtagatcgggaggagaggaatgcgtatgtgttcttg |
4859256 |
T |
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| Q |
314 |
gttttgtgacatagagaattat |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
4859255 |
gttttgtgacatagagaattat |
4859234 |
T |
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