View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_85 (Length: 339)
Name: NF9366_low_85
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 7035767 - 7035460
Alignment:
| Q |
1 |
aatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagagg |
100 |
Q |
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| T |
7035767 |
aatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagagg |
7035668 |
T |
|
| Q |
101 |
ctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattctttgatatgtcaagctacttataatcaatgtttttaacacatgttttttac |
200 |
Q |
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| T |
7035667 |
ctg----tttgaaggctatttcattctacctttgttgaggggaaaattctttgatatgtcaag-----------caatgtttttaacacatgttttttac |
7035583 |
T |
|
| Q |
201 |
tggcatgcttcaaacgaaatcaatgtattattattcttttccctatagtgagttgaacttagttaatgtgttttggtgagtttgtcaaagatgttatact |
300 |
Q |
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| T |
7035582 |
tggcatgcttcaaacgaaatcaatgtattattattcttttccctatagtgagttgaacttggttaatgtgttttggtgagtttgtcaaagatgttatact |
7035483 |
T |
|
| Q |
301 |
acagtgatatttatgaatggatg |
323 |
Q |
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| T |
7035482 |
acagtgatatttatgaatggatg |
7035460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 323
Target Start/End: Complemental strand, 7897006 - 7896693
Alignment:
| Q |
5 |
ttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctgt |
104 |
Q |
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| T |
7897006 |
ttctcccttgtctaaaaa-tgtgtgtatctcaattatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctg- |
7896909 |
T |
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| Q |
105 |
ttgtttgaaggctatttcattctacctttgttgaggggaaaattctttgatatgtcaagctacttataatcaatgtttttaacacatgttttttactg-- |
202 |
Q |
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| T |
7896908 |
---tttgaaggctatttcattctacctttgttgaggggaaaattctttgatatg---------------tcaatgtttttaacacatgttttttactggc |
7896827 |
T |
|
| Q |
203 |
-----gcatgcttcaa--------acgaaatcaatgtattattattcttttccctatagtgagttgaacttagttaatgtgttttggtgagtttgtcaaa |
289 |
Q |
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| T |
7896826 |
atcatgcatgcttcaaacaaaatcacgaaatcactgtattattattcttttccctatattgagttgaacttagttaatgtgtctttgtgagtttgtcaaa |
7896727 |
T |
|
| Q |
290 |
gatgttatactacagtgatatttatgaatggatg |
323 |
Q |
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| T |
7896726 |
gatgttatactacagtgatatttatgaatggatg |
7896693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 7039325 - 7039080
Alignment:
| Q |
6 |
tctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatc----aattgcaa-ttgaatttctt-actattggattcttaaccgaa-aga |
98 |
Q |
| |
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| T |
7039325 |
tctcccttgtcctaaaaatat-tgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattcttaaccgaacaga |
7039227 |
T |
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| Q |
99 |
ggctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattctttgatatgtcaagctacttataatcaatgtttttaacacatgtttttt |
198 |
Q |
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| T |
7039226 |
ggctgtttat----aggctatttcatactacccttgttgaggggaaaattctttgaaatgtcaagccactcatattcaatgtttttcacacatg--tttt |
7039133 |
T |
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| Q |
199 |
actggcatgcttcaaacgaaatcaatgtattattattcttttccctatagtga |
251 |
Q |
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|||| | ||||||||| || ||| | || ||||||||||||||||| ||||| |
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| T |
7039132 |
actgccctgcttcaaatgacatctttctagtattattcttttccctaaagtga |
7039080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 7880935 - 7880819
Alignment:
| Q |
174 |
tcaatgtttttaacacatgttttttactggcatgcttcaaacgaaatcaatgtattattattcttttccctatagtgagttgaacttagttaatgtgttt |
273 |
Q |
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||||||||||| ||||||||||| |||| | ||||||||| || ||| | || ||||||||||||||||| |||||||| |||| || ||||||| | |
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| T |
7880935 |
tcaatgtttttcacacatgtttt--actgccctgcttcaaatgacatctttctagtattattcttttccctaaagtgagttagactttgtaaatgtgtct |
7880838 |
T |
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| Q |
274 |
tggtgagtttgtcaaagat |
292 |
Q |
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| T |
7880837 |
tggcgaggttgtcaaagat |
7880819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 29380169 - 29380083
Alignment:
| Q |
64 |
ttgaatttcttactattggattcttaaccgaa-agaggctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattctttga |
154 |
Q |
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| T |
29380169 |
ttgaatttcttactattggatt-ttaacccaacagaggctgttta----aaggctatttcatactacccttgttgaagggaaaattctttga |
29380083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 29379148 - 29379054
Alignment:
| Q |
229 |
tattattcttttccctatagtgagttgaacttagttaatgtgttttggtgagtttgtcaaagatgttatactacagtgatatttatgaatggatg |
323 |
Q |
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|||||||||||| |||| |||||||| |||| | ||||||| |||||||| |||||| ||||| ||||||||| | |||||||| |||||| |
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| T |
29379148 |
tattattcttttacctaaagtgagttatactttataaatgtgtcttggtgaggctgtcaaggatgtgatactacagaaaaatttatgagtggatg |
29379054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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