View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_91 (Length: 329)
Name: NF9366_low_91
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_91 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 2547323 - 2547003
Alignment:
| Q |
7 |
tggagttgatcgaagagagtttgaatttagtggaaaagatttgtcgtcgttgacaacgtgatgaactattgttcaaatttcaatgtataaaaatttcaat |
106 |
Q |
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| T |
2547323 |
tggagttgatcgaagagagcttgaatttagtggaaaagatttgtcgtcgttgacaacgtgatgaactattgttcaaatttcaatgtataaaaatttcaat |
2547224 |
T |
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| Q |
107 |
atgttatatttgaatatttaccgttnnnnnnnnncttataggaaaccaataaaggaaaatcctaccctaaaatggtctactactgtcccaatccaaaaca |
206 |
Q |
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| T |
2547223 |
atgttatatttgaatatttaccgttaaaaaaaa-cttataggaaaccaataaaggaaaatcctaccctaaaatggtctactactgtcccaatccaaaaca |
2547125 |
T |
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| Q |
207 |
gcataagactaaatcttgtcttttagttttctttgaagatagattgtcaggtacacagacaagtcaatgtatcaaaagcaaagaagttgagtttcgcagt |
306 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| || | |
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| T |
2547124 |
gcatagg-ctaaatcttgtcttttagttttctttgaagatagattgtcatgtacacagccaagtcaatctatcaaaagcaaagaagttgagtttctcatt |
2547026 |
T |
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| Q |
307 |
ggtagaaatgtatcccaaaatca |
329 |
Q |
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||||||||||||||||||||||| |
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| T |
2547025 |
ggtagaaatgtatcccaaaatca |
2547003 |
T |
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