View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_92 (Length: 329)

Name: NF9366_low_92
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_92
NF9366_low_92
[»] chr4 (25 HSPs)
chr4 (1-319)||(48852402-48852720)
chr4 (176-278)||(48891326-48891428)
chr4 (129-221)||(48898586-48898678)
chr4 (116-221)||(37827110-37827215)
chr4 (129-221)||(49044312-49044404)
chr4 (172-227)||(48170690-48170745)
chr4 (119-214)||(48863086-48863181)
chr4 (129-220)||(50250907-50250998)
chr4 (172-217)||(48870452-48870497)
chr4 (172-221)||(48875756-48875805)
chr4 (172-217)||(48886138-48886183)
chr4 (130-212)||(7822840-7822922)
chr4 (173-227)||(33133924-33133978)
chr4 (172-218)||(48705478-48705524)
chr4 (256-296)||(49048623-49048663)
chr4 (170-221)||(49048700-49048751)
chr4 (176-215)||(50672412-50672451)
chr4 (130-212)||(7800508-7800590)
chr4 (130-212)||(7813351-7813433)
chr4 (176-230)||(48156525-48156579)
chr4 (262-300)||(49041210-49041248)
chr4 (171-221)||(49041271-49041321)
chr4 (257-319)||(50669047-50669109)
chr4 (257-314)||(49044219-49044276)
chr4 (133-221)||(50668923-50669011)
[»] chr6 (3 HSPs)
chr6 (129-296)||(21015673-21015840)
chr6 (119-230)||(21979757-21979868)
chr6 (258-300)||(14197710-14197752)
[»] chr5 (4 HSPs)
chr5 (172-229)||(42562439-42562496)
chr5 (175-213)||(29261163-29261201)
chr5 (170-212)||(29688019-29688061)
chr5 (262-319)||(29696203-29696260)
[»] chr7 (2 HSPs)
chr7 (176-319)||(48883712-48883855)
chr7 (175-213)||(30120435-30120473)
[»] chr3 (3 HSPs)
chr3 (129-221)||(47452023-47452115)
chr3 (129-215)||(11015641-11015727)
chr3 (235-300)||(11024574-11024639)
[»] chr1 (1 HSPs)
chr1 (129-214)||(24310050-24310135)
[»] chr8 (3 HSPs)
chr8 (257-315)||(12200299-12200357)
chr8 (257-315)||(12444727-12444785)
chr8 (142-287)||(4031960-4032105)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 48852402 - 48852720
Alignment:
Q  1 ctattcgtctcaacttcagaacttcaaactcgatctatagatctcgaagcatcgcttaacgttgaggccgcttcactgaaccaccttacttttatgcccc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48852402 ctattcgtctcaacttcagaacttcaaactctatctatagatctcgaagcatcgcttaacgttgaggccacttcactgaaccaccttacttttatgcccc 48852501  T
Q  101 aatcttatctttacattcatattaatgcttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||    
T  48852502 aatcttatctttacattcatattaatgcttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttca 48852601  T
Q  201 caaacaaatacctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgattacttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48852602 caaacaaatacctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgattacttg 48852701  T
Q  301 ttagttttaatgtcctatg 319  Q
     ||||||||||||||||||    
T  48852702 gtagttttaatgtcctatg 48852720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 48891326 - 48891428
Alignment:
Q  176 tatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggta 275  Q
    ||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||| |||||||||||||||||| ||||    
T  48891326 tatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattcgaggttagatgccaactatttatgttatctatatggttttaggta 48891425  T
Q  276 tga 278  Q
    |||    
T  48891426 tga 48891428  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 48898586 - 48898678
Alignment:
Q  129 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 221  Q
    ||||||||||||||||||| |||| ||   ||  ||||| ||  |||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  48898586 ttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttgtctcc 48898678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 37827215 - 37827110
Alignment:
Q  116 ttcatattaatgcttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaataccttt 215  Q
    |||| ||||| | |||| ||||||| ||| ||||||| |||||||||| | | || ||| ||||||||||||| || ||| |||||||||||||||| ||    
T  37827215 ttcaaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaataccctt 37827116  T
Q  216 gtctcc 221  Q
    ||||||    
T  37827115 gtctcc 37827110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 49044404 - 49044312
Alignment:
Q  129 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 221  Q
    |||||||||||| ||||||||||| || ||| || ||   | ||| |||||||||||||| ||  ||||||||||||||||||||||||||||    
T  49044404 ttcatgtagagggtttatatttttgcatcgtgctgcaacaacttatctatggaatccatccactagagttcacaaacaaatacctttgtctcc 49044312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 48170745 - 48170690
Alignment:
Q  172 tacctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattga 227  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||    
T  48170745 tacctatggaatccatccacccgagttcataaacaaatacctttgtctcctattga 48170690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 48863086 - 48863181
Alignment:
Q  119 atattaatgcttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctt 214  Q
    ||||||| ||||||| ||||||||||||  ||||  || || ||||| | || ||||||||||||||||| ||||||| ||| |||||||||||||    
T  48863086 atattaaagcttcatctagaggctttattgttttcaactgtgcttcaaacatctacctatggaatccatccaccggagctcagaaacaaatacctt 48863181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 50250998 - 50250907
Alignment:
Q  129 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctc 220  Q
    |||||||||||| ||||||||||| ||| ||| ||||    | ||||||||||||||||| |||||  |||||| |||||||||||||||||    
T  50250998 ttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttgtctc 50250907  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 48870452 - 48870497
Alignment:
Q  172 tacctatggaatccatctaccggagttcacaaacaaatacctttgt 217  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  48870452 tacctatggaatccatccaccggatttcacaaacaaatacctttgt 48870497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 48875756 - 48875805
Alignment:
Q  172 tacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 221  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  48875756 tacctatggaatccatccaccggatttcacaaacaaatacctatgtctcc 48875805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 48886138 - 48886183
Alignment:
Q  172 tacctatggaatccatctaccggagttcacaaacaaatacctttgt 217  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  48886138 tacctatggaatccatccaccggatttcacaaacaaatacctttgt 48886183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 7822840 - 7822922
Alignment:
Q  130 tcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacc 212  Q
    |||||| |||| ||| |||||||  |||||| | |||| ||||||||||||||||||||||| ||| || | |||||||||||    
T  7822840 tcatgtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaaacaaatacc 7822922  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 33133978 - 33133924
Alignment:
Q  173 acctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattga 227  Q
    |||||||||||||||  ||| ||||||| |||||||||||||||||||| |||||    
T  33133978 acctatggaatccattcacccgagttcataaacaaatacctttgtctccaattga 33133924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 48705524 - 48705478
Alignment:
Q  172 tacctatggaatccatctaccggagttcacaaacaaatacctttgtc 218  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  48705524 tacctgtggaatccatctactggatttcacaaacaaatacctttgtc 48705478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 49048663 - 49048623
Alignment:
Q  256 tatctatatggttttgggtatgacccgtcaaccgatgatta 296  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  49048663 tatctatatggttttgggtatgacccatcaacagatgatta 49048623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 49048751 - 49048700
Alignment:
Q  170 tttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 221  Q
    ||||||| ||||||||||| ||  ||||||||| ||||||||||||||||||    
T  49048751 tttacctttggaatccatccactagagttcacagacaaatacctttgtctcc 49048700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 50672412 - 50672451
Alignment:
Q  176 tatggaatccatctaccggagttcacaaacaaataccttt 215  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaataccttt 50672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 7800508 - 7800590
Alignment:
Q  130 tcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacc 212  Q
    |||||| |||| ||| |||||||  |||||| | |||| |||||||| |||||||||||||| ||| || | |||||||||||    
T  7800508 tcatgtggagggtttttatttttataccgttttccagacatttacctgtggaatccatctactggatttaagaaacaaatacc 7800590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 7813351 - 7813433
Alignment:
Q  130 tcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacc 212  Q
    |||||| |||| ||| |||||||  |||||| | |||| |||||||| |||||||||||||| ||| || | |||||||||||    
T  7813351 tcatgtggagggtttttatttttataccgttttccagacatttacctgtggaatccatctactggatttaagaaacaaatacc 7813433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 48156579 - 48156525
Alignment:
Q  176 tatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgattc 230  Q
    ||||||||||||| ||  ||||| |||||||||||||||||||||| | ||||||    
T  48156579 tatggaatccatcaactagagtttacaaacaaatacctttgtctcctaatgattc 48156525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 49041248 - 49041210
Alignment:
Q  262 tatggttttgggtatgacccgtcaaccgatgattacttg 300  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttg 49041210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 49041321 - 49041271
Alignment:
Q  171 ttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 221  Q
    |||||||||||| ||||| ||||||| |||||||| |||||||||| ||||    
T  49041321 ttacctatggaacccatccaccggagctcacaaactaatacctttgcctcc 49041271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 50669047 - 50669109
Alignment:
Q  257 atctatatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtcctatg 319  Q
    |||||||||||||||| ||||||| |||||  |||||||||||| | |||| | |||||||||    
T  50669047 atctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatg 50669109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 49044276 - 49044219
Alignment:
Q  257 atctatatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtc 314  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||| | ||||| |||||    
T  49044276 atctatattgttttgggtatgatccgtcaacagatgattatttggtggttttgatgtc 49044219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 50668923 - 50669011
Alignment:
Q  133 tgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 221  Q
    |||||||||||||||||||| ||  |||||||  | || | | ||||||||||||| ||| || |||| ||||| ||||| ||||||||    
T  50668923 tgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacagataccattgtctcc 50669011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 296
Target Start/End: Original strand, 21015673 - 21015840
Alignment:
Q  129 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgat 228  Q
    |||||||||||| ||||||||||| |||| |  |||| | || ||||||||||||||||| ||  |||||||||||||||||||||||||||| | |  |    
T  21015673 ttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagt 21015772  T
Q  229 tcgaggttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgatta 296  Q
    ||    |||| || ||  ||| | ||||||||||||||||||||||||||||| ||||| ||||||||    
T  21015773 tcatatttaggtgtcaattatatatgttatctatatggttttgggtatgacccatcaacagatgatta 21015840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 21979868 - 21979757
Alignment:
Q  119 atattaatgcttcatgtagaggctttatattttttcaccgttcttcagagatt-tacctatggaatccatctaccggagttcacaaacaaatacctttgt 217  Q
    ||||||| | |||||||||||| ||||||||||| ||| ||| |||| ||| | ||| ||||||| || ||||| ||| |||| ||||||||||||||||    
T  21979868 atattaaaggttcatgtagaggatttatatttttccactgtttttca-agactctacatatggaacccgtctactggacttcaaaaacaaatacctttgt 21979770  T
Q  218 ctcccattgattc 230  Q
    ||||  |||||||    
T  21979769 ctcctcttgattc 21979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 300
Target Start/End: Complemental strand, 14197752 - 14197710
Alignment:
Q  258 tctatatggttttgggtatgacccgtcaaccgatgattacttg 300  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||    
T  14197752 tctatatggctttgggtatgacctgtcaaccaatgattacttg 14197710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 42562496 - 42562439
Alignment:
Q  172 tacctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgatt 229  Q
    ||||||||||||||||| | ||||  |||||||||||||||||||||||| |||||||    
T  42562496 tacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgatt 42562439  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 29261163 - 29261201
Alignment:
Q  175 ctatggaatccatctaccggagttcacaaacaaatacct 213  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  29261163 ctatggaatccatcaaccggagtccacaaacaaatacct 29261201  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 29688019 - 29688061
Alignment:
Q  170 tttacctatggaatccatctaccggagttcacaaacaaatacc 212  Q
    |||| |||||||||||||| ||||||||||||| |||||||||    
T  29688019 tttatctatggaatccatccaccggagttcacagacaaatacc 29688061  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 29696203 - 29696260
Alignment:
Q  262 tatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtcctatg 319  Q
    ||||||||||||||||||  |||||| |||||||||||| |  ||| |||||||||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatg 29696260  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 319
Target Start/End: Original strand, 48883712 - 48883855
Alignment:
Q  176 tatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatggcacat-atttctgttatctatatggttttgggt 274  Q
    ||||||||||||  || ||| |||||||||||||||||||||||||  || |||| |  | ||| |  |||| |||||  | |||||||||||||||| |    
T  48883712 tatggaatccatacactggatttcacaaacaaatacctttgtctcctttttattccatttcagaagt-acattatttcgatcatctatatggttttggtt 48883810  T
Q  275 atgacccgtcaaccgatgattacttgttagttttaatgtcctatg 319  Q
    ||||||||||||  ||||||||| || | |||| |||||||||||    
T  48883811 atgacccgtcaagagatgattacatggtggtttcaatgtcctatg 48883855  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 30120473 - 30120435
Alignment:
Q  175 ctatggaatccatctaccggagttcacaaacaaatacct 213  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  30120473 ctatggaatccatccaccggagtccacaaacaaatacct 30120435  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 47452115 - 47452023
Alignment:
Q  129 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcc 221  Q
    |||||||||||| |||||| ||||     |||||||| | || ||| ||||||||||||| || |||||||||||||||||||||||| ||||    
T  47452115 ttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttgcctcc 47452023  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 11015727 - 11015641
Alignment:
Q  129 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaataccttt 215  Q
    |||||||||||| |||||| ||||     |||||||| | || ||||||||||||||||| || |||  ||||||||||||||||||    
T  11015727 ttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 11024639 - 11024574
Alignment:
Q  235 ttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgattacttg 300  Q
    ||||||| || |||||  |||| |||||||||||||||||||||||  ||||  ||||||||||||    
T  11024639 ttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaagagatgattacttg 11024574  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 24310050 - 24310135
Alignment:
Q  129 ttcatgtagaggctttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctt 214  Q
    |||||||||||| |||||||| ||  |  ||| |||| | |||||| ||||||||||||| ||||||||||| | |||||||||||    
T  24310050 ttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacctt 24310135  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 12200299 - 12200357
Alignment:
Q  257 atctatatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtcc 315  Q
    |||||||||||||||| ||||||| |||||  |||||||||||| | |||||| |||||    
T  12200299 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12200357  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 12444727 - 12444785
Alignment:
Q  257 atctatatggttttgggtatgacccgtcaaccgatgattacttgttagttttaatgtcc 315  Q
    |||||||||||||||| ||||||| |||||  |||||||||||| | |||||| |||||    
T  12444727 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12444785  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 4032105 - 4031960
Alignment:
Q  142 tttatattttttcaccgttcttcagagatttacctatggaatccatctaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatg 241  Q
    ||||||||| | ||| |||||||||| ||    ||||||||| |||| |  ||||||||||||||||||||||| ||||| ||| |||| |   |||| |    
T  4032105 tttatatttatgcacagttcttcagacatacttctatggaattcatccattggagttcacaaacaaatacctttatctcctattaattccaatctagacg 4032006  T
Q  242 gcacatatttctgttatctatatggttttgggtatgacccgtcaac 287  Q
         | |||| ||||| ||||||||||||||||||||| ||||||    
T  4032005 atggttgtttcggttatttatatggttttgggtatgaccagtcaac 4031960  T

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