View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9367_low_2 (Length: 377)
Name: NF9367_low_2
Description: NF9367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9367_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 45082225 - 45082574
Alignment:
| Q |
17 |
accacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccag |
116 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082225 |
accacattacttgtaactccagaaatatcagtgcaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccag |
45082324 |
T |
|
| Q |
117 |
taaaagggtcgttcgaaattccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtt |
216 |
Q |
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||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082325 |
taaaagggtcgttagaaattccttcaactttgcccgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtt |
45082424 |
T |
|
| Q |
217 |
tggatcaaatcccttatcaggatgatctccataagaacctgtcatccaaaacacatatttcaatgtattcaaatccattcctttgacaaaaatgtccttc |
316 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082425 |
tggatcaaatccgttatcaggatgatctccataagaacctgtcatccaaaacacatatttcaatgtattcaaatccattcctttgacaaaaatgtccttc |
45082524 |
T |
|
| Q |
317 |
acaaaagcacctctaccgacggcagatttgatcctaacagctgattctgt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082525 |
acaaaagcacctctaccgacggcagatttgatcctaacagctgattctgt |
45082574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 45077929 - 45078279
Alignment:
| Q |
17 |
accacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccag |
116 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45077929 |
accacattacttgtaactccagaaatatcagtgcaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccag |
45078028 |
T |
|
| Q |
117 |
taaaagggtcgttcgaaattccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtt |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45078029 |
taaaagggtcgttagaaattccttcaagtttgcccgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtt |
45078128 |
T |
|
| Q |
217 |
tggatcaaatcccttatcaggatgatctccataagaacctgtcatccaaaacacatatttcaatgtattcaaatccattcctttgacaaaaatgtccttc |
316 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
45078129 |
tggatcaaatccgttatcaggatgatctccataagaacctgtcatccaaaacacatatttcattgtattcaaatccattcctttgacgaaaatgtccttc |
45078228 |
T |
|
| Q |
317 |
acaaaagcacctctaccgacggcagatttgatcctaacagctgattctgtg |
367 |
Q |
| |
|
|||||||||||||||||||| |||||||| || |||| ||| ||||||||| |
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|
| T |
45078229 |
acaaaagcacctctaccgacagcagattttattctaatagcggattctgtg |
45078279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 45074701 - 45075048
Alignment:
| Q |
19 |
cacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
45074701 |
cacattacttgtaactccagaaacatcagtgcaattccatggaagtttcttcttatgtgcactcatttcaatagtcgcattagaaacacaaattccagta |
45074800 |
T |
|
| Q |
119 |
aaagggtcgttcgaaattccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtttg |
218 |
Q |
| |
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|||||||| || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45074801 |
aaagggtcattagaaattccatcaagtttgcctgcaatagtcacattcttggcagtaacatctctataatttatttcactaattttaggcaatgcgtttg |
45074900 |
T |
|
| Q |
219 |
gatcaaatcccttatcaggatgatctccataagaacctgtcatccaaaacacatatttcaatgtattcaaatccattcctttgacaaaaatgtccttcac |
318 |
Q |
| |
|
|||||||||| |||||||| || |||||| |||||||||||||| |||||||||| ||| | ||||| ||||||||||||||||||||||||||| |
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| T |
45074901 |
gatcaaatccattatcagggtgtgacttataagaccctgtcatccaaaaaacatatttcattgtgtccaaattcattcctttgacaaaaatgtccttcac |
45075000 |
T |
|
| Q |
319 |
aaaagcacctctaccgacggcagatttgatcctaacagctgattctgt |
366 |
Q |
| |
|
| | || |||||||||| ||| | |||||| |||||||| |||||||| |
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| T |
45075001 |
atatgcgcctctaccgatggctgttttgattctaacagccgattctgt |
45075048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 367
Target Start/End: Original strand, 45067143 - 45067489
Alignment:
| Q |
21 |
cattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaa |
120 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||| || || || |
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|
| T |
45067143 |
cattacttgcaactccagaaacatcagtgcaattccatggaagattattcttctgtgcactcatttcaatagtcacattagaaatgcatatccctgtgaa |
45067242 |
T |
|
| Q |
121 |
agggtcgttcgaaattccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtttgga |
220 |
Q |
| |
|
|||||| || |||||||| ||||||| |||||||| |||||||||||||| | | ||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
45067243 |
agggtcattagaaattccgtcaagttgtcctgcaattgtcacattcttagcaataatatctctatagtttattccactaattttaggcaatgcttttgga |
45067342 |
T |
|
| Q |
221 |
tcaaatcccttatcaggatgatctccataagaacctgtcatccaaaacacatatttcaatgtattcaaatccattcctttgacaaaaatgtccttcacaa |
320 |
Q |
| |
|
|||||||| || |||| || ||||| |||||||||||||| |||||||||| ||| ||||||| |||||||||||| || || ||||||||| |
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| T |
45067343 |
tcaaatccattttcagcgtgtgacttataagcccctgtcatccaaaaaacatatttcattgtgttcaaattcattcctttgacgaatatatccttcacat |
45067442 |
T |
|
| Q |
321 |
aagcacctctaccgacggcagatttgatcctaacagctgattctgtg |
367 |
Q |
| |
|
| || |||||||| ||||| | |||||| |||||||||||||||||| |
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|
| T |
45067443 |
atgcgcctctaccaacggctgttttgattctaacagctgattctgtg |
45067489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 34504465 - 34504823
Alignment:
| Q |
17 |
accacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttat------gtgcactcatttcaatagtcacattagaaacacata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | | | || | |||||||||||||||||||| ||||| |
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|
| T |
34504465 |
accacattacttgtaactccagaaacatctgtgcaattccatggaagtttcttcttcttcttaagctcgcttaattcaatagtcacattagaaatacata |
34504564 |
T |
|
| Q |
111 |
ttccagtaaaagggtcgttcgaaattccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaa |
210 |
Q |
| |
|
| || |||||||| || || |||||||||||||||| || |||| |||||||||||||| | ||||||||| || | |||||| ||||||||||||| |
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|
| T |
34504565 |
tccctgtaaaaggatcattagaaattccttcaagttgccccgcaacggtcacattcttagcaataacatctctaaaaataattccagtaattttaggcaa |
34504664 |
T |
|
| Q |
211 |
tgcgtttggatcaaatcccttatcaggatgatctccataagaacctgtcatccaaaacacatatttcaa---tgtattcaaatccattcctttgacaaaa |
307 |
Q |
| |
|
||| |||||||||||||| |||||||| || ||||||||||| ||||||| ||||||||||||| |||| ||| ||||| | || ||||||||||||| |
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|
| T |
34504665 |
tgcttttggatcaaatccattatcagggtggtctccataagaccctgtcaaccaaaacacatatctcaatattgtgttcaatttcactcctttgacaaaa |
34504764 |
T |
|
| Q |
308 |
atgtccttcacaaaagcacctctaccgacggcagatttgatcctaacagctgattctgt |
366 |
Q |
| |
|
|||||||||||| | | |||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
34504765 |
atgtccttcacatatccgcctctaccgacggctgatttgattctaacagctgattctgt |
34504823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 17584404 - 17584522
Alignment:
| Q |
244 |
tccataagaacctgtcatccaaaacacatatttcaatgtattcaaatccattcctttgacaaaaatgtccttcacaaaagcacctctaccgacggcagat |
343 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| ||||| | ||||||| | ||||| || | |||||| | || |||||||| || |||| | |
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|
| T |
17584404 |
tccatatgaacctgtcatccaaaacacatatttcattgttttcaatttcattcctctaacaaatatacctttcacatatgctcctctaccaactgcagtt |
17584503 |
T |
|
| Q |
344 |
ttgatcctaacagctgatt |
362 |
Q |
| |
|
||||| |||| |||||||| |
|
|
| T |
17584504 |
ttgattctaatagctgatt |
17584522 |
T |
|
Back To:
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