View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9367_low_3 (Length: 375)

Name: NF9367_low_3
Description: NF9367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9367_low_3
NF9367_low_3
[»] scaffold0421 (1 HSPs)
scaffold0421 (48-362)||(12456-12768)


Alignment Details
Target: scaffold0421 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 48 - 362
Target Start/End: Complemental strand, 12768 - 12456
Alignment:
Q  48 gtaatacaagaaaaagaatgatggttttaaacaaaacacaatatatcttttgctttacttaaaaagttccaagaaaaccaacatattcatttatataaaa 147  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12768 gtaatacaagaaaaagaatgatggttttaaacaaa-cacaatatagcttttgctttacttaaaaagttccaagaaaaccaacagattcatttatataaaa 12670  T
Q  148 attacttttggcccataatatttataaaataacacgataggttttttggtatttatatagacatacttcatcagaatggcctggaagatcttccttcaat 247  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12669 attacttttggcccataatatttataaaataacacgctag-ttttttggtatttatatagacatacttcatcagaatggcctggaagatcttccttcaat 12571  T
Q  248 ttacgtgttcgaacatcccaaacctagggaacaaagcacaatgaaaggtcaaagatcttctttgctactgagagttagtgtaatttaaggtacaaacgaa 347  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12570 ttacgtgtccgaatatcccaaacctggggaacaaagcacaatgaaaggtcaaagatcttctttgctactgagagttactgtaatttaaggtacaaacgaa 12471  T
Q  348 gctaaatgatgtcca 362  Q
    |||||||||||||||    
T  12470 gctaaatgatgtcca 12456  T

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