View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9367_low_5 (Length: 285)
Name: NF9367_low_5
Description: NF9367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9367_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 2203511 - 2203256
Alignment:
| Q |
10 |
ggacatcattttttaagagtgccaaaataattatttttacgatacaagtttattgattcgctcaagacaacaaaatttttaggtctggctgcatagaaat |
109 |
Q |
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| T |
2203511 |
ggacatcattttttaagagtgccaaaatagttatttttacgatacaagtttattgattcgctcaagacagcaaaatttttaggtctggttgcatagaaat |
2203412 |
T |
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| Q |
110 |
atttagtgtcgcgacggtaaaagagagaagataaaccgttgaaatctaaaatattaacatgtaccttgcagataaaaaataattattccatattcatgat |
209 |
Q |
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| T |
2203411 |
atttagtgtcgcgacagtaaaagagagaagataa-------------aaaaaattaacatgtaccttgcagataaaaaa-aattattccatattcatgat |
2203326 |
T |
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| Q |
210 |
tcaatgttgaagtgcaaaatttgtcctttccagtttttggtatgtacataataactgaaacaacaccaaa |
279 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2203325 |
tcaatgttcaagtgcaaaatttgtcctttccagtttttggtatgtacataataactgaaacagcaccaaa |
2203256 |
T |
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