View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9367_low_9 (Length: 273)
Name: NF9367_low_9
Description: NF9367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9367_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 26733725 - 26733486
Alignment:
| Q |
19 |
agctgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaagatca |
118 |
Q |
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| T |
26733725 |
agctgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaagatca |
26733626 |
T |
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| Q |
119 |
ttatttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtacctatgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26733625 |
ttatttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgtttttcatctttctcttttgctcagttttgtacctatgaa |
26733526 |
T |
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| Q |
219 |
ttggtttgcaatgtttgcattgggtgtatttaatttctct |
258 |
Q |
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| T |
26733525 |
ttggtttgcaatgtttgcattgggtgtatttaatttctct |
26733486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 26725409 - 26725172
Alignment:
| Q |
21 |
ctgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaagatcatt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
26725409 |
ctgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaagatcatt |
26725310 |
T |
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| Q |
121 |
atttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtacctatgaatt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26725309 |
atttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctaagttttgtacctatgaatt |
26725210 |
T |
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| Q |
221 |
ggtttgcaatgtttgcattgggtgtatttaatttctct |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26725209 |
ggtttgcaatgtttgcattgggtgtatttaatttctct |
26725172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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